RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PSG9Q00887 426 aa20.42■□□□□ 0.86
HMGB1-205ENST00000399494 MIR17HGQ75NE6 70 aa20.42■□□□□ 0.86
HMGB1-205ENST00000399494 POM121L12Q8N7R1 296 aa20.42■□□□□ 0.86
HMGB1-205ENST00000399494 SLC25A2Q9BXI2 301 aa20.41■□□□□ 0.86
HMGB1-205ENST00000399494 ZNF586Q9NXT0 402 aa20.41■□□□□ 0.86
HMGB1-205ENST00000399494 TNFSF18Q9UNG2 199 aa20.41■□□□□ 0.86
HMGB1-205ENST00000399494 FUT9Q9Y231 359 aa20.41■□□□□ 0.86
HMGB1-205ENST00000399494 ZNF705DP0CH99 300 aaPredicted RBP20.4■□□□□ 0.86
HMGB1-205ENST00000399494 ZNF705BP0CI00 300 aaPredicted RBP20.4■□□□□ 0.86
HMGB1-205ENST00000399494 PYYP10082 97 aa20.4■□□□□ 0.86
HMGB1-205ENST00000399494 CNN1P51911 297 aaKnown RBP20.4■□□□□ 0.86
HMGB1-205ENST00000399494 RPUSD4Q96CM3 377 aaKnown RBP20.4■□□□□ 0.86
HMGB1-205ENST00000399494 SLC35B3Q9H1N7 401 aa20.4■□□□□ 0.86
HMGB1-205ENST00000399494 P0DMU3 169 aa20.39■□□□□ 0.85
HMGB1-205ENST00000399494 FAM231AP0DMU4 169 aa20.39■□□□□ 0.85
HMGB1-205ENST00000399494 FAM231CP0DMU5 169 aa20.39■□□□□ 0.85
HMGB1-205ENST00000399494 HIST1H1EP10412 219 aaKnown RBP20.39■□□□□ 0.85
HMGB1-205ENST00000399494 HIST1H1AQ02539 215 aaPredicted RBP20.39■□□□□ 0.85
HMGB1-205ENST00000399494 TIMM9Q9Y5J7 89 aa20.39■□□□□ 0.85
HMGB1-205ENST00000399494 RHOBP62745 196 aa20.38■□□□□ 0.85
HMGB1-205ENST00000399494 ACOT6Q3I5F7 207 aaPredicted RBP20.38■□□□□ 0.85
HMGB1-205ENST00000399494 HSD17B11Q8NBQ5 300 aa20.38■□□□□ 0.85
HMGB1-205ENST00000399494 OR8A1Q8NGG7 326 aa20.38■□□□□ 0.85
HMGB1-205ENST00000399494 BLNKQ8WV28 456 aa20.38■□□□□ 0.85
HMGB1-205ENST00000399494 SAT2Q96F10 170 aaPredicted RBP20.38■□□□□ 0.85
HMGB1-205ENST00000399494 NDUFAF3Q9BU61 184 aa20.38■□□□□ 0.85
HMGB1-205ENST00000399494 RFNGQ9Y644 331 aa20.38■□□□□ 0.85
HMGB1-205ENST00000399494 RNF222A6NCQ9 220 aa20.37■□□□□ 0.85
HMGB1-205ENST00000399494 ZNF253O75346 499 aa20.37■□□□□ 0.85
HMGB1-205ENST00000399494 FAM167A-AS1Q96KT0 104 aa20.37■□□□□ 0.85
HMGB1-205ENST00000399494 OR51M1Q9H341 326 aa20.37■□□□□ 0.85
HMGB1-205ENST00000399494 PPP1R14DQ9NXH3 145 aa20.37■□□□□ 0.85
HMGB1-205ENST00000399494 PKHD1P08F94 4074 aa20.37■□□□□ 0.85
HMGB1-205ENST00000399494 TRBV19A0A075B6N1 114 aa20.36■□□□□ 0.85
HMGB1-205ENST00000399494 RTL8CO15255 209 aa20.36■□□□□ 0.85
HMGB1-205ENST00000399494 OR7C2O60412 319 aa20.36■□□□□ 0.85
HMGB1-205ENST00000399494 PRB4P10163 310 aaPredicted RBP20.36■□□□□ 0.85
HMGB1-205ENST00000399494 PAXXQ9BUH6 204 aa20.36■□□□□ 0.85
HMGB1-205ENST00000399494 ZNF705FA8MVS1 300 aaPredicted RBP20.35■□□□□ 0.85
HMGB1-205ENST00000399494 G3V3Q6 166 aa20.35■□□□□ 0.85
HMGB1-205ENST00000399494 SMLR1H3BR10 107 aa20.35■□□□□ 0.85
HMGB1-205ENST00000399494 ARPC5O15511 151 aa20.35■□□□□ 0.85
HMGB1-205ENST00000399494 TAS2R45P59539 299 aa20.35■□□□□ 0.85
HMGB1-205ENST00000399494 PDE6HQ13956 83 aa20.35■□□□□ 0.85
HMGB1-205ENST00000399494 ZNF705AQ6ZN79 300 aaPredicted RBP20.35■□□□□ 0.85
HMGB1-205ENST00000399494 NEU1Q99519 415 aa20.35■□□□□ 0.85
HMGB1-205ENST00000399494 BORCS7-ASMTA0A0B4J1R7 106 aa20.34■□□□□ 0.85
HMGB1-205ENST00000399494 PRSS29PA6NIE9 313 aa20.34■□□□□ 0.85
HMGB1-205ENST00000399494 A8MTW9 85 aa20.34■□□□□ 0.85
HMGB1-205ENST00000399494 M0R2N4 97 aa20.34■□□□□ 0.85
HMGB1-205ENST00000399494 OR10J4P0C629 311 aa20.34■□□□□ 0.85
HMGB1-205ENST00000399494 M6PRP20645 277 aa20.34■□□□□ 0.85
HMGB1-205ENST00000399494 KHDC3LQ587J8 217 aa20.34■□□□□ 0.85
HMGB1-205ENST00000399494 OR10J6PQ8NGY7 276 aa20.34■□□□□ 0.85
HMGB1-205ENST00000399494 IGHV3OR16-12A0A075B7B8 117 aa20.33■□□□□ 0.85
HMGB1-205ENST00000399494 A0A1W2PPV4 95 aa20.33■□□□□ 0.85
HMGB1-205ENST00000399494 AMTNQ6UX39 209 aa20.33■□□□□ 0.85
HMGB1-205ENST00000399494 AAMDCQ9H7C9 122 aa20.33■□□□□ 0.85
HMGB1-205ENST00000399494 NBEAP1P0C6P0 100 aa20.32■□□□□ 0.84
HMGB1-205ENST00000399494 MED14OSP0DP75 135 aa20.32■□□□□ 0.84
HMGB1-205ENST00000399494 ATP6V0CP27449 155 aa20.32■□□□□ 0.84
HMGB1-205ENST00000399494 RAB2AP61019 212 aa20.32■□□□□ 0.84
HMGB1-205ENST00000399494 SPINK13Q1W4C9 94 aa20.32■□□□□ 0.84
HMGB1-205ENST00000399494 PSMG3Q9BT73 122 aaPredicted RBP20.32■□□□□ 0.84
HMGB1-205ENST00000399494 GOLT1BQ9Y3E0 138 aa20.32■□□□□ 0.84
HMGB1-205ENST00000399494 BOLA2-SMG1P6H3BVE0 249 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 M0R2Z0 102 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 NDUFB4O95168 129 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 SPART-AS1P0CW21 52 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 LGALS9BQ3B8N2 356 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 FAM122CQ6P4D5 195 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 OR10G4Q8NGN3 311 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 OR10G9Q8NGN4 311 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 OR10G7Q8NGN6 311 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 RNF141Q8WVD5 230 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 PKD1P98161 4303 aa20.31■□□□□ 0.84
HMGB1-205ENST00000399494 SMIM9A6NGZ8 99 aa20.3■□□□□ 0.84
HMGB1-205ENST00000399494 UBE2L3P68036 154 aaKnown RBP20.3■□□□□ 0.84
HMGB1-205ENST00000399494 RPL7L1Q6DKI1 246 aaKnown RBP20.3■□□□□ 0.84
HMGB1-205ENST00000399494 OR2G3Q8NGZ4 309 aa20.3■□□□□ 0.84
HMGB1-205ENST00000399494 FXYD5Q96DB9 178 aa20.3■□□□□ 0.84
HMGB1-205ENST00000399494 PRELID1Q9Y255 219 aa20.3■□□□□ 0.84
HMGB1-205ENST00000399494 RYR1P21817 5038 aa20.29■□□□□ 0.84
HMGB1-205ENST00000399494 PRAC2D3DTV9 90 aa20.29■□□□□ 0.84
HMGB1-205ENST00000399494 EXOC3-AS1Q8N2X6 119 aa20.29■□□□□ 0.84
HMGB1-205ENST00000399494 GNPNAT1Q96EK6 184 aaPredicted RBP20.29■□□□□ 0.84
HMGB1-205ENST00000399494 MRPL53Q96EL3 112 aaKnown RBP20.29■□□□□ 0.84
HMGB1-205ENST00000399494 IGF2BP2-AS1Q96M15 143 aa20.29■□□□□ 0.84
HMGB1-205ENST00000399494 TMEM189A5PLL7 270 aa20.28■□□□□ 0.84
HMGB1-205ENST00000399494 INSP01308 110 aa20.28■□□□□ 0.84
HMGB1-205ENST00000399494 EMP1P54849 157 aa20.28■□□□□ 0.84
HMGB1-205ENST00000399494 SERF2P84101 59 aa20.28■□□□□ 0.84
HMGB1-205ENST00000399494 TMEM208Q9BTX3 173 aa20.28■□□□□ 0.84
HMGB1-205ENST00000399494 SH3BGRL3Q9H299 93 aa20.28■□□□□ 0.84
HMGB1-205ENST00000399494 M0R3E3 92 aa20.27■□□□□ 0.84
HMGB1-205ENST00000399494 TAAR5O14804 337 aa20.27■□□□□ 0.84
HMGB1-205ENST00000399494 EIF3GO75821 320 aaKnown RBP eCLIP20.27■□□□□ 0.84
HMGB1-205ENST00000399494 MBP02144 154 aa20.27■□□□□ 0.84
HMGB1-205ENST00000399494 ICAM4Q14773 271 aa20.27■□□□□ 0.84
HMGB1-205ENST00000399494 DYNC1H1Q14204 4646 aaKnown RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms