RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 CCL20P78556 96 aa7.08□□□□□ -1.28
SYNE1-206ENST00000367253 FAM120AOSQ5T036 256 aa7.08□□□□□ -1.28
SYNE1-206ENST00000367253 WISP3O95389 354 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-206ENST00000367253 HOXD3P31249 432 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-206ENST00000367253 PAX9P55771 341 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 FAM219BQ5XKK7 198 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 TEX45Q8NA69 505 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 CHCHD2Q9Y6H1 151 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-206ENST00000367253 SDK2Q58EX2 2172 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 TRGV1A0A0A0MS02 117 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 PRSS46E5RG02 174 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 KLRD1Q13241 179 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 SS18Q15532 418 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 TNCP24821 2201 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 PVRIGQ6DKI7 326 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 IL17RELQ6ZVW7 336 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 LY6G5BQ8NDX9 201 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 LYNX1G3V0Z9 82 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 PIN1P1O15428 100 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 ZNHIT1O43257 154 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 LYNX1P0DP58 116 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 SPATA31B1PQ5VZV4 182 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 SRXN1Q9BYN0 137 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 PPDPFQ9H3Y8 114 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 VPREB3Q9UKI3 123 aa7.07□□□□□ -1.28
SYNE1-206ENST00000367253 PTPRDP23468 1912 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 TRBV5-7A0A0A0MS05 114 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 RNF222A6NCQ9 220 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 PFN2P35080 140 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 FAM19A5Q7Z5A7 132 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-206ENST00000367253 RNASE7Q9H1E1 156 aaKnown RBP7.06□□□□□ -1.28
SYNE1-206ENST00000367253 PRORYQ9H606 182 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 IGHV3-35A0A0C4DH35 117 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 GREB1Q4ZG55 1949 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 A0A1W2PPI3 338 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 IGHV2-5P01817 119 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 CXCL5P42830 114 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 HILS1P60008 231 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 VWC2Q2TAL6 325 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 JPT2Q9H910 190 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 RPUSD1Q9UJJ7 312 aaKnown RBP7.06□□□□□ -1.28
SYNE1-206ENST00000367253 F8VVB4 439 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 F8VWA3 439 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 F8WDY8 70 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 SPART-AS1P0CW21 52 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 PLA2G2AP14555 144 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 NTN5Q8WTR8 489 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-206ENST00000367253 PRO0628Q9UI54 55 aa7.06□□□□□ -1.28
SYNE1-206ENST00000367253 TNRC6AQ8NDV7 1962 aaKnown RBP7.05□□□□□ -1.28
SYNE1-206ENST00000367253 TRAV12-2A0A075B6T6 113 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 IGHV3OR16-13A0A075B7E8 117 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 IGHV3-74A0A0B4J1X5 117 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 CD7P09564 240 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 GP9P14770 177 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 LY6G6FQ5SQ64 297 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 ACACBO00763 2458 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 ZNRF1Q8ND25 227 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 LINC00477Q96M19 166 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 GPHA2Q96T91 129 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 RHODO00212 210 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 IGHV1-46P01743 117 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 INAFM2P0DMQ5 153 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 NKAPP1Q8N9T2 125 aa7.05□□□□□ -1.28
SYNE1-206ENST00000367253 PLXNA3P51805 1871 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 IGLV3-21P80748 117 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-206ENST00000367253 MDS2Q8NDY4 140 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 PIFOQ8TCI5 191 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 SPRR3Q9UBC9 169 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 IGHV3-49A0A0A0MS15 119 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 IGKV3D-20A0A0C4DH25 116 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 IGHV1-18A0A0C4DH31 117 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 UQCRQO14949 82 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 LINC00694P0DN24 101 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 WFDC2Q14508 124 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 ACTL10Q5JWF8 245 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 IFI27L2Q9H2X8 130 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 TMEM178BH3BS89 294 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 PEBP1P30086 187 aaKnown RBP7.04□□□□□ -1.28
SYNE1-206ENST00000367253 PLEKHB2Q96CS7 222 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 SCRT1Q9BWW7 348 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 FGF16O43320 207 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 FOXG1P55316 489 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-206ENST00000367253 BVES-AS1Q5T3Y7 98 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 ZNF843Q8N446 348 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 Q96M66 194 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 NDUFA12Q9UI09 145 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 NBASA2RRP1 2371 aa7.04□□□□□ -1.28
SYNE1-206ENST00000367253 MT-ATP8P03928 68 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 GATA2P23769 480 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-206ENST00000367253 RNASE4P34096 147 aaKnown RBP7.03□□□□□ -1.28
SYNE1-206ENST00000367253 PRB3Q04118 309 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-206ENST00000367253 TSC2P49815 1807 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 FRMPD3Q5JV73 1810 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 TTC28Q96AY4 2481 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 SCN8AQ9UQD0 1980 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 GZMMP51124 257 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 PRR30Q53SZ7 412 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-206ENST00000367253 C1QL2Q7Z5L3 287 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 NDUFA4O00483 81 aa7.03□□□□□ -1.28
SYNE1-206ENST00000367253 TAX1BP3O14907 124 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms