RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PYGO2Q9BRQ0 406 aa15.77■□□□□ 0.12
CCDC88B-202ENST00000356786 C11orf68Q9H3H3 251 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-202ENST00000356786 NCOR1P1Q9H4R4 102 aa15.77■□□□□ 0.12
CCDC88B-202ENST00000356786 EDA2RQ9HAV5 297 aa15.77■□□□□ 0.12
CCDC88B-202ENST00000356786 SLC25A20O43772 301 aa15.77■□□□□ 0.12
CCDC88B-202ENST00000356786 ETV2O00321 342 aaPredicted RBP15.77■□□□□ 0.11
CCDC88B-202ENST00000356786 LMO1P25800 156 aa15.77■□□□□ 0.11
CCDC88B-202ENST00000356786 LGALS9BQ3B8N2 356 aa15.77■□□□□ 0.11
CCDC88B-202ENST00000356786 LGALS9CQ6DKI2 356 aa15.77■□□□□ 0.11
CCDC88B-202ENST00000356786 CCL25O15444 150 aa15.77■□□□□ 0.11
CCDC88B-202ENST00000356786 PDE6HQ13956 83 aa15.77■□□□□ 0.11
CCDC88B-202ENST00000356786 GATD1Q8NB37 220 aa15.77■□□□□ 0.11
CCDC88B-202ENST00000356786 CEACAM8P31997 349 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 PPDPFLQ8WWR9 84 aa15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 GOLGB1Q14789 3259 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 CDKN1BP46527 198 aa15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 TMEM86BQ8N661 226 aa15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 YLPM1P49750 1951 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 ERCC8Q13216 396 aa15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 LINC00477Q96M19 166 aa15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 IGHV3-73A0A0B4J1V6 119 aa15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 TRAV41A0A0B4J266 112 aa15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 KLRD1Q13241 179 aa15.76■□□□□ 0.11
CCDC88B-202ENST00000356786 LGALS1P09382 135 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 ZNF672Q499Z4 452 aaPredicted RBP15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 PLA2G2EQ9NZK7 142 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 H3BMG7 143 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 SPXQ9BT56 116 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 SLC25A16P16260 332 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 TRBV20-1A0A075B6N2 111 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 IGLC7A0M8Q6 106 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 PRSS46E5RG02 174 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 AZU1P20160 251 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 TDRG1Q3Y452 100 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 CCL19Q99731 98 aa15.75■□□□□ 0.11
CCDC88B-202ENST00000356786 ZNF688P0C7X2 276 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 FAM168AQ92567 244 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 BUB1B-PAK6H3BSN5 160 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 MRPL51Q4U2R6 128 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 AMTNQ6UX39 209 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 ATP6V0BQ99437 205 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 NDUFA4L2Q9NRX3 87 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 NUPR1O60356 82 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 GHRHP01286 108 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 CRPP02741 224 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 C2orf66Q6UXQ4 117 aa15.74■□□□□ 0.11
CCDC88B-202ENST00000356786 ADARB2-AS1A8MUL3 147 aa15.73■□□□□ 0.11
CCDC88B-202ENST00000356786 K7EN84 100 aa15.73■□□□□ 0.11
CCDC88B-202ENST00000356786 TMEM75Q8N9X5 138 aa15.73■□□□□ 0.11
CCDC88B-202ENST00000356786 SIGLEC8Q9NYZ4 499 aa15.73■□□□□ 0.11
CCDC88B-202ENST00000356786 PAX4O43316 350 aa15.73■□□□□ 0.11
CCDC88B-202ENST00000356786 A0A087WWL8 130 aa15.73■□□□□ 0.11
CCDC88B-202ENST00000356786 C8orf49Q96NF6 230 aa15.73■□□□□ 0.11
CCDC88B-202ENST00000356786 TIMM21Q9BVV7 248 aa15.73■□□□□ 0.11
CCDC88B-202ENST00000356786 COX6B1P14854 86 aa15.72■□□□□ 0.11
CCDC88B-202ENST00000356786 CHCHD5Q9BSY4 110 aa15.72■□□□□ 0.11
CCDC88B-202ENST00000356786 TRBV19A0A075B6N1 114 aa15.72■□□□□ 0.11
CCDC88B-202ENST00000356786 VMO1Q7Z5L0 202 aa15.72■□□□□ 0.11
CCDC88B-202ENST00000356786 K7ERJ3 54 aa15.72■□□□□ 0.11
CCDC88B-202ENST00000356786 TMEM219Q86XT9 240 aa15.72■□□□□ 0.11
CCDC88B-202ENST00000356786 THBDP07204 575 aa15.71■□□□□ 0.11
CCDC88B-202ENST00000356786 MALP21145 153 aa15.71■□□□□ 0.11
CCDC88B-202ENST00000356786 ZNF48Q96MX3 618 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-202ENST00000356786 MRPL35Q9NZE8 188 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-202ENST00000356786 FCN3O75636 299 aa15.71■□□□□ 0.11
CCDC88B-202ENST00000356786 Q8N8P6 123 aa15.71■□□□□ 0.11
CCDC88B-202ENST00000356786 LYPD2Q6UXB3 125 aa15.71■□□□□ 0.1
CCDC88B-202ENST00000356786 C9orf153Q5TBE3 101 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 STHQ8IWL8 128 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 DEFB125Q8N687 156 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 ZNF625Q96I27 306 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 VGLL1Q99990 258 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 PEMTQ9UBM1 199 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 IGHV2-70DA0A0C4DH43 119 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 LY6G5BQ8NDX9 201 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 MALRD1Q5VYJ5 2156 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 TRGV4A0A0C4DH28 118 aa15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 RNASE8Q8TDE3 154 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 CHD3Q12873 2000 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-202ENST00000356786 GAGE2AQ6NT46 116 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 WDR86Q86TI4 376 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 MYMXA0A1B0GTQ4 84 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 SPANXA1Q9NS26 97 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 TP53TG1Q9Y2A0 90 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 PLXNA4Q9HCM2 1894 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 NPYP01303 97 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 MDS2Q8NDY4 140 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 RASL10AQ92737 203 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 C1orf159Q96HA4 380 aa15.69■□□□□ 0.1
CCDC88B-202ENST00000356786 H3BMM0 161 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 UBE2WQ96B02 151 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 OOSP1A8MZH6 123 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 PRR20EP86478 221 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 PRR20CP86479 221 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 PRR20DP86480 221 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 PRR20BP86481 221 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 PRR20AP86496 221 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 RNF166Q96A37 237 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 CD59P13987 128 aa15.68■□□□□ 0.1
CCDC88B-202ENST00000356786 WT1-ASQ06250 92 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms