RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 KLF12Q9Y4X4 402 aa12.52□□□□□ -0.41
PDLIM1-201ENST00000329399 TRBV6-1A0A0K0K1D8 114 aa12.51□□□□□ -0.41
PDLIM1-201ENST00000329399 GNG4P50150 75 aa12.51□□□□□ -0.41
PDLIM1-201ENST00000329399 LINC01551Q86U37 167 aa12.51□□□□□ -0.41
PDLIM1-201ENST00000329399 FMC1Q96HJ9 113 aa12.51□□□□□ -0.41
PDLIM1-201ENST00000329399 C20orf24Q9BUV8 137 aa12.51□□□□□ -0.41
PDLIM1-201ENST00000329399 LGALS1P09382 135 aaKnown RBP12.5□□□□□ -0.41
PDLIM1-201ENST00000329399 HOXD3P31249 432 aaPredicted RBP12.5□□□□□ -0.41
PDLIM1-201ENST00000329399 TMEM183BQ1AE95 376 aa12.5□□□□□ -0.41
PDLIM1-201ENST00000329399 OR1N2Q8NGR9 330 aa12.5□□□□□ -0.41
PDLIM1-201ENST00000329399 BTF3L4Q96K17 158 aa12.5□□□□□ -0.41
PDLIM1-201ENST00000329399 SLC50A1Q9BRV3 221 aa12.5□□□□□ -0.41
PDLIM1-201ENST00000329399 IGHV4OR15-8A0A075B7B6 117 aa12.49□□□□□ -0.41
PDLIM1-201ENST00000329399 A0A087WW49 117 aa12.49□□□□□ -0.41
PDLIM1-201ENST00000329399 PPP5D1E7EU14 171 aa12.49□□□□□ -0.41
PDLIM1-201ENST00000329399 CSN1S1P47710 185 aa12.49□□□□□ -0.41
PDLIM1-201ENST00000329399 SAMD13Q5VXD3 122 aa12.49□□□□□ -0.41
PDLIM1-201ENST00000329399 IMMP2LQ96T52 175 aa12.49□□□□□ -0.41
PDLIM1-201ENST00000329399 UFC1Q9Y3C8 167 aa12.49□□□□□ -0.41
PDLIM1-201ENST00000329399 TCRAP04437 139 aa12.48□□□□□ -0.41
PDLIM1-201ENST00000329399 SLURP1P55000 103 aa12.48□□□□□ -0.41
PDLIM1-201ENST00000329399 UBE2G1P62253 170 aa12.48□□□□□ -0.41
PDLIM1-201ENST00000329399 SIGLEC15Q6ZMC9 328 aa12.48□□□□□ -0.41
PDLIM1-201ENST00000329399 ISOC2Q96AB3 205 aa12.48□□□□□ -0.41
PDLIM1-201ENST00000329399 DERL1Q9BUN8 251 aa12.48□□□□□ -0.41
PDLIM1-201ENST00000329399 TRBV12-3P01733 135 aa12.47□□□□□ -0.41
PDLIM1-201ENST00000329399 RNF212Q495C1 297 aa12.47□□□□□ -0.41
PDLIM1-201ENST00000329399 TMEM88Q6PEY1 159 aa12.47□□□□□ -0.41
PDLIM1-201ENST00000329399 C16orf54Q6UWD8 224 aa12.47□□□□□ -0.41
PDLIM1-201ENST00000329399 CBLN2Q8IUK8 224 aa12.47□□□□□ -0.41
PDLIM1-201ENST00000329399 OCC1Q8TAD7 63 aa12.47□□□□□ -0.41
PDLIM1-201ENST00000329399 DLX4Q92988 240 aaPredicted RBP12.47□□□□□ -0.41
PDLIM1-201ENST00000329399 DAZ1Q9NQZ3 744 aaKnown RBP12.47□□□□□ -0.41
PDLIM1-201ENST00000329399 IGHV3-35A0A0C4DH35 117 aa12.46□□□□□ -0.41
PDLIM1-201ENST00000329399 ZNF785A8K8V0 405 aa12.46□□□□□ -0.41
PDLIM1-201ENST00000329399 H7BYZ3 331 aa12.46□□□□□ -0.41
PDLIM1-201ENST00000329399 LGALS9O00182 355 aa12.46□□□□□ -0.41
PDLIM1-201ENST00000329399 S100PP25815 95 aa12.46□□□□□ -0.41
PDLIM1-201ENST00000329399 CENPWQ5EE01 88 aa12.46□□□□□ -0.41
PDLIM1-201ENST00000329399 MRPL53Q96EL3 112 aaKnown RBP12.46□□□□□ -0.41
PDLIM1-201ENST00000329399 TRBV20OR9-2A0A075B6H5 130 aa12.46□□□□□ -0.42
PDLIM1-201ENST00000329399 GCGP01275 180 aa12.46□□□□□ -0.42
PDLIM1-201ENST00000329399 RPEL1Q2QD12 228 aa12.46□□□□□ -0.42
PDLIM1-201ENST00000329399 REC114Q7Z4M0 266 aa12.46□□□□□ -0.42
PDLIM1-201ENST00000329399 TMEM75Q8N9X5 138 aa12.46□□□□□ -0.42
PDLIM1-201ENST00000329399 SFRP2Q96HF1 295 aa12.46□□□□□ -0.42
PDLIM1-201ENST00000329399 IGF2BP2-AS1Q96M15 143 aa12.46□□□□□ -0.42
PDLIM1-201ENST00000329399 AURKAIP1Q9NWT8 199 aaPredicted RBP12.46□□□□□ -0.42
PDLIM1-201ENST00000329399 ISLRO14498 428 aa12.45□□□□□ -0.42
PDLIM1-201ENST00000329399 BAGE2Q86Y30 109 aa12.45□□□□□ -0.42
PDLIM1-201ENST00000329399 OSTCQ9NRP0 149 aa12.45□□□□□ -0.42
PDLIM1-201ENST00000329399 ZFP30Q9Y2G7 519 aa12.45□□□□□ -0.42
PDLIM1-201ENST00000329399 COL7A1Q02388 2944 aa12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 IGHV7-4-1A0A0J9YVY3 117 aa12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 COLCA2A8K830 154 aa12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 LINC01619G3V211 115 aa12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 KCNIP4Q6PIL6 250 aa12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 OR10G8Q8NGN5 311 aa12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 GLMPQ8WWB7 406 aa12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 ZNF331Q9NQX6 463 aaPredicted RBP12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 SMAD5-AS1Q9Y6J3 95 aa12.44□□□□□ -0.42
PDLIM1-201ENST00000329399 TRAV9-1A0A075B6T8 112 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 ZNF320A2RRD8 509 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 RBAKDNA6NC62 111 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 A8MWP6 167 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 DIRC3C9JPN6 131 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 FOLR2P14207 255 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 RPL19P84098 196 aaKnown RBP12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 EGFEM1PQ0D2K5 195 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 FAM231DQ6ZW35 169 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 DPF1Q92782 380 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 SORL1Q92673 2214 aa12.43□□□□□ -0.42
PDLIM1-201ENST00000329399 DNAH9Q9NYC9 4486 aa12.42□□□□□ -0.42
PDLIM1-201ENST00000329399 LTAP01374 205 aa12.42□□□□□ -0.42
PDLIM1-201ENST00000329399 EXOC3-AS1Q8N2X6 119 aa12.42□□□□□ -0.42
PDLIM1-201ENST00000329399 C17orf77Q96MU5 243 aa12.42□□□□□ -0.42
PDLIM1-201ENST00000329399 YPEL4Q96NS1 127 aa12.42□□□□□ -0.42
PDLIM1-201ENST00000329399 SMPXQ9UHP9 88 aa12.42□□□□□ -0.42
PDLIM1-201ENST00000329399 TRBV24-1A0A075B6N3 115 aa12.41□□□□□ -0.42
PDLIM1-201ENST00000329399 K7EIL1 84 aa12.41□□□□□ -0.42
PDLIM1-201ENST00000329399 PSG3Q16557 428 aa12.41□□□□□ -0.42
PDLIM1-201ENST00000329399 UNQ9165/PRO28630Q6UXU0 137 aa12.41□□□□□ -0.42
PDLIM1-201ENST00000329399 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.41□□□□□ -0.42
PDLIM1-201ENST00000329399 SLC17A3O00476 420 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 OVOL1O14753 267 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 IGLV2-8P01709 118 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 GNG5P63218 68 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 ELOBQ15370 118 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 SAPCD1Q5SSQ6 148 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 GOLT1AQ6ZVE7 132 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 TMEM183AQ8IXX5 376 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 MLST8Q9BVC4 326 aa12.4□□□□□ -0.42
PDLIM1-201ENST00000329399 IGHV3OR16-8A0A075B7F1 116 aa12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 H3BTX0 84 aa12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 K7EN84 100 aa12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 CHEK1O14757 476 aa12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 PFN1P07737 140 aaKnown RBP12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 ERVFC1-1P60608 527 aa12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 FLI1Q01543 452 aaPredicted RBP12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms