RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 OR10J1P30954 320 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 MARCKSL1P49006 195 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF140P52738 457 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TPI1P60174 286 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 CDC42P60953 191 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 MEF2BQ02080 365 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-201ENST00000326004 ALKAL1Q6UXT8 129 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 ZCCHC23Q6ZST2 131 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 HIST2H3AQ71DI3 136 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TCF24Q7RTU0 167 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TMED4Q7Z7H5 227 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 LRP11Q86VZ4 500 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 C1orf158Q8N1D5 194 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 LRRC25Q8N386 305 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-201ENST00000326004 WFDC11Q8NEX6 87 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 OR11H1Q8NG94 326 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 OR11H2Q8NH07 326 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 LCN9Q8WX39 176 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 UBE2WQ96B02 151 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 ROPN1LQ96C74 230 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 MALSU1Q96EH3 234 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 DIRAS2Q96HU8 199 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 SLC35G5Q96KT7 338 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 CCDC115Q96NT0 180 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 S100A13Q99584 98 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 HIST1H2BLQ99880 126 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 MIEN1Q9BRT3 115 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 DUSP21Q9H596 190 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 RPUSD1Q9UJJ7 312 aaKnown RBP1.6□□□□□ -2.15
HMGB1-201ENST00000326004 VPREB3Q9UKI3 123 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 UFC1Q9Y3C8 167 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 LINC00588Q9Y4M8 146 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TRAPPC1Q9Y5R8 145 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TNRC6BQ9UPQ9 1833 aaKnown RBP1.6□□□□□ -2.15
HMGB1-201ENST00000326004 DCHS2Q6V1P9 2916 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 DSCAMO60469 2012 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 HYDINQ4G0P3 5121 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 COL4A2P08572 1712 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 LCTP09848 1927 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 HELZP42694 1942 aaKnown RBP1.6□□□□□ -2.15
HMGB1-201ENST00000326004 MYLKQ15746 1914 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 PI4KAP42356 2102 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 ESPL1Q14674 2120 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.59□□□□□ -2.151e-6■■■■□ 22.6
HMGB1-201ENST00000326004 TRAV30A0A087WSZ9 112 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 FXYD6-FXYD2A0A087WZ82 144 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 LOC100130705A0A1B0GUX0 176 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 A0A1W2PNN7 141 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 C7orf77A4D0Y5 90 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 PRORSD1PA6NEY8 169 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM235A6NFC5 223 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 H3BQ85 93 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 CORTO00230 105 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 PDE6DO43924 150 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 SNAPC5O75971 98 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 CDS2O95674 445 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 SERPINA7P05543 415 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 SFTA3P0C7M3 94 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 UBBP0CG47 229 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 ESDP10768 282 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 OPRM1P35372 400 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 PPP1CCP36873 323 aaKnown RBP1.59□□□□□ -2.15
HMGB1-201ENST00000326004 CA7P43166 264 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 FOXA1P55317 472 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 FGF12P61328 243 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 UBA52P62987 128 aaKnown RBP1.59□□□□□ -2.15
HMGB1-201ENST00000326004 HBA1P69905 142 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 PMAIP1Q13794 54 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 LTC4SQ16873 150 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 DEFB109BQ30KR1 87 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 TDRG1Q3Y452 100 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 OR2T2Q6IF00 324 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 UNQ5815/PRO19632Q6UWF5 114 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 SBSNQ6UWP8 590 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 HEPN1Q6WQI6 88 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 C1orf174Q8IYL3 243 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 OR8I2Q8N0Y5 310 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 OR6V1Q8N148 313 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 C3orf22Q8N5N4 141 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 FAM24BQ8N5W8 94 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 DEFB125Q8N687 156 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 OR1L8Q8NGR8 309 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 OR13C4Q8NGS5 318 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 OR2T27Q8NH04 317 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 SLC25A44Q96H78 314 aaPredicted RBP1.59□□□□□ -2.15
HMGB1-201ENST00000326004 SIGMAR1Q99720 223 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 SEC11CQ9BY50 192 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 FXYD6Q9H0Q3 95 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 LPAR5Q9H1C0 372 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 TUBA4BQ9H853 241 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 UQCC1Q9NVA1 299 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 SLC23A2Q9UGH3 650 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 JPT1Q9UK76 154 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 WASHC3Q9Y3C0 194 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 FIS1Q9Y3D6 152 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 ARL5AQ9Y689 179 aa1.59□□□□□ -2.15
HMGB1-201ENST00000326004 WNK1Q9H4A3 2382 aa1.59□□□□□ -2.16
HMGB1-201ENST00000326004 MYH7P12883 1935 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 KNTC1P50748 2209 aa1.58□□□□□ -2.16
HMGB1-201ENST00000326004 TRBV24-1A0A075B6N3 115 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms