RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 C9orf118A6NHY6 69 aa12.66□□□□□ -0.38
HCFC1-201ENST00000310441 C3orf36Q3SXR2 165 aa12.66□□□□□ -0.38
HCFC1-201ENST00000310441 IGHV1-18A0A0C4DH31 117 aa12.66□□□□□ -0.38
HCFC1-201ENST00000310441 TMEM178BH3BS89 294 aa12.66□□□□□ -0.38
HCFC1-201ENST00000310441 KLHL30-AS1Q8NEE0 82 aa12.66□□□□□ -0.38
HCFC1-201ENST00000310441 NABP1Q96AH0 204 aa12.66□□□□□ -0.38
HCFC1-201ENST00000310441 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.66□□□□□ -0.38
HCFC1-201ENST00000310441 FCN3O75636 299 aa12.66□□□□□ -0.38
HCFC1-201ENST00000310441 A0A1W2PR77 199 aa12.65□□□□□ -0.38
HCFC1-201ENST00000310441 NMSQ5H8A3 153 aa12.65□□□□□ -0.38
HCFC1-201ENST00000310441 GLRX5Q86SX6 157 aa12.65□□□□□ -0.38
HCFC1-201ENST00000310441 ZNF625Q96I27 306 aaPredicted RBP12.65□□□□□ -0.38
HCFC1-201ENST00000310441 PIP4P2Q8N4L2 257 aa12.65□□□□□ -0.38
HCFC1-201ENST00000310441 NAV3Q8IVL0 2385 aa12.65□□□□□ -0.38
HCFC1-201ENST00000310441 hADV29S1A0JD25 119 aa12.65□□□□□ -0.38
HCFC1-201ENST00000310441 IGHV1-46P01743 117 aa12.65□□□□□ -0.38
HCFC1-201ENST00000310441 CSRP3P50461 194 aa12.65□□□□□ -0.38
HCFC1-201ENST00000310441 PRSS46E5RG02 174 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 LTBRP36941 435 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 LHFPL1Q86WI0 220 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 MYO18BQ8IUG5 2567 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 ZNF329Q86UD4 541 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 IGKV1D-43A0A0B4J1Z2 117 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 C3orf79P0CE67 100 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 PFN1P07737 140 aaKnown RBP12.64□□□□□ -0.39
HCFC1-201ENST00000310441 LAIR2Q6ISS4 152 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 PCNX3Q9H6A9 2034 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 CDKN1AP38936 164 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 SLAQ13239 276 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 Q86TA4 180 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 ZNF492Q9P255 531 aa12.64□□□□□ -0.39
HCFC1-201ENST00000310441 ACYP1P07311 99 aa12.63□□□□□ -0.39
HCFC1-201ENST00000310441 LINC01356Q8N9X3 169 aa12.63□□□□□ -0.39
HCFC1-201ENST00000310441 TNRC6BQ9UPQ9 1833 aaKnown RBP12.63□□□□□ -0.39
HCFC1-201ENST00000310441 WFDC1Q9HC57 220 aa12.63□□□□□ -0.39
HCFC1-201ENST00000310441 C1orf43Q9BWL3 253 aa12.63□□□□□ -0.39
HCFC1-201ENST00000310441 SIGLEC9Q9Y336 463 aa12.63□□□□□ -0.39
HCFC1-201ENST00000310441 HERVK_113P63121 156 aa12.63□□□□□ -0.39
HCFC1-201ENST00000310441 COLQQ9Y215 455 aaPredicted RBP12.63□□□□□ -0.39
HCFC1-201ENST00000310441 RPL35AP18077 110 aaKnown RBP12.63□□□□□ -0.39
HCFC1-201ENST00000310441 BVES-AS1Q5T3Y7 98 aa12.63□□□□□ -0.39
HCFC1-201ENST00000310441 IGKV1-9A0A0C4DH69 117 aa12.63□□□□□ -0.39
HCFC1-201ENST00000310441 SHISA3A0PJX4 238 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 TAL2Q16559 108 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 LYZL4Q96KX0 146 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 RPP25LQ8N5L8 163 aaKnown RBP12.62□□□□□ -0.39
HCFC1-201ENST00000310441 C20orf144Q9BQM9 153 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 HGFACQ04756 655 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 LYL1P12980 280 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 SHANK2-AS3Q9BTD1 123 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 PRO1854Q9UHT4 67 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 CRLF1O75462 422 aa12.62□□□□□ -0.39
HCFC1-201ENST00000310441 TP53TG1Q9Y2A0 90 aa12.61□□□□□ -0.39
HCFC1-201ENST00000310441 DMRTC2Q8IXT2 367 aaPredicted RBP12.61□□□□□ -0.39
HCFC1-201ENST00000310441 ATP6V0BQ99437 205 aa12.61□□□□□ -0.39
HCFC1-201ENST00000310441 GAGE1Q13065 139 aa12.61□□□□□ -0.39
HCFC1-201ENST00000310441 ZNF672Q499Z4 452 aaPredicted RBP12.61□□□□□ -0.39
HCFC1-201ENST00000310441 BMPERQ8N8U9 685 aa12.61□□□□□ -0.39
HCFC1-201ENST00000310441 TMEM243Q9BU79 118 aa12.61□□□□□ -0.39
HCFC1-201ENST00000310441 CSRP1P21291 193 aaKnown RBP12.61□□□□□ -0.39
HCFC1-201ENST00000310441 Q8N8P6 123 aa12.61□□□□□ -0.39
HCFC1-201ENST00000310441 SLC25A16P16260 332 aa12.6□□□□□ -0.39
HCFC1-201ENST00000310441 C1orf122Q6ZSJ8 110 aa12.6□□□□□ -0.39
HCFC1-201ENST00000310441 H0YIZ8 118 aa12.6□□□□□ -0.39
HCFC1-201ENST00000310441 CD24P25063 80 aa12.6□□□□□ -0.39
HCFC1-201ENST00000310441 DAD1P61803 113 aa12.6□□□□□ -0.39
HCFC1-201ENST00000310441 A0A0A6YYD4 124 aa12.6□□□□□ -0.39
HCFC1-201ENST00000310441 CRYGSP22914 178 aa12.6□□□□□ -0.39
HCFC1-201ENST00000310441 FUSP35637 526 aaKnown RBP eCLIP12.6□□□□□ -0.39
HCFC1-201ENST00000310441 A8MWP6 167 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 SIVA1O15304 175 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 AMN1Q8IY45 258 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 TCF15Q12870 199 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 SPRR3Q9UBC9 169 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 FOXG1P55316 489 aaPredicted RBP12.59□□□□□ -0.39
HCFC1-201ENST00000310441 ANKRD29Q8N6D5 301 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 NUP210LQ5VU65 1888 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 CTSBP07858 339 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 LCNL1Q6ZST4 164 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 TMEM219Q86XT9 240 aa12.59□□□□□ -0.39
HCFC1-201ENST00000310441 ZNF837Q96EG3 531 aaPredicted RBP12.59□□□□□ -0.39
HCFC1-201ENST00000310441 RHPN1-AS1Q9BWJ2 59 aa12.58□□□□□ -0.39
HCFC1-201ENST00000310441 H3BUX3 64 aa12.58□□□□□ -0.4
HCFC1-201ENST00000310441 FGF6P10767 208 aa12.58□□□□□ -0.4
HCFC1-201ENST00000310441 HAMPP81172 84 aa12.58□□□□□ -0.4
HCFC1-201ENST00000310441 E9PQ18 207 aa12.58□□□□□ -0.4
HCFC1-201ENST00000310441 A0A087WWL8 130 aa12.58□□□□□ -0.4
HCFC1-201ENST00000310441 ZCCHC24Q8N2G6 241 aaKnown RBP12.58□□□□□ -0.4
HCFC1-201ENST00000310441 PAQR4Q8N4S7 273 aaPredicted RBP12.58□□□□□ -0.4
HCFC1-201ENST00000310441 DEFB121Q5J5C9 76 aa12.58□□□□□ -0.4
HCFC1-201ENST00000310441 ZNF362Q5T0B9 420 aaPredicted RBP12.58□□□□□ -0.4
HCFC1-201ENST00000310441 NDUFS6O75380 124 aaKnown RBP12.57□□□□□ -0.4
HCFC1-201ENST00000310441 KLF5Q13887 457 aaPredicted RBP12.57□□□□□ -0.4
HCFC1-201ENST00000310441 MCRIP2Q9BUT9 160 aaKnown RBP12.57□□□□□ -0.4
HCFC1-201ENST00000310441 C22orf46C9J442 243 aa12.57□□□□□ -0.4
HCFC1-201ENST00000310441 KLRD1Q13241 179 aa12.57□□□□□ -0.4
HCFC1-201ENST00000310441 CEND1Q8N111 149 aa12.57□□□□□ -0.4
HCFC1-201ENST00000310441 Q8TAT8 98 aa12.57□□□□□ -0.4
HCFC1-201ENST00000310441 TMEM256Q8N2U0 113 aa12.57□□□□□ -0.4
HCFC1-201ENST00000310441 SCRT2Q9NQ03 307 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms