RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TCRAP04437 139 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 PAX8Q06710 450 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 SPATA31B1PQ5VZV4 182 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 FGFBP3Q8TAT2 258 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 RCHY1Q96PM5 261 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 MST1LQ2TV78 715 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 C14orf178Q8N769 122 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-201ENST00000295550 TRGV1A0A0A0MS02 117 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 STPG4Q8N801 248 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 TRGV9Q99603 122 aa8.08□□□□□ -1.12
COL6A3-201ENST00000295550 ZNF138P52744 262 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 TMEM14EPQ6UXP3 125 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 Q8TAT8 98 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 C5orf63A6NC05 138 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 PRIMA1Q86XR5 153 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 PINLYPA6NC86 204 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 hADV29S1A0JD25 119 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE1Q13065 139 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 TCTEX1D4Q5JR98 221 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 RNF144BQ7Z419 303 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 UBE2DNLQ8IWF7 75 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 C20orf144Q9BQM9 153 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 COL4A3Q01955 1670 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 B3GALT5-AS1P59052 145 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 SPXQ9BT56 116 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 TRAV41A0A0B4J266 112 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 LY96Q9Y6Y9 160 aa8.07□□□□□ -1.12
COL6A3-201ENST00000295550 IGKV1-5P01602 117 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 NPSP0C0P6 89 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 SLX1AQ9BQ83 275 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 MUC22E2RYF6 1773 aaPredicted RBP8.06□□□□□ -1.12
COL6A3-201ENST00000295550 K7EP13 123 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 RBM3P98179 157 aaKnown RBP8.06□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE12HA6NDE8 117 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 C6orf226Q5I0X4 101 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 UTF1Q5T230 341 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 C1orf147Q96MC9 270 aaPredicted RBP8.06□□□□□ -1.12
COL6A3-201ENST00000295550 COLQQ9Y215 455 aaPredicted RBP8.06□□□□□ -1.12
COL6A3-201ENST00000295550 IGHG4P01861 327 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 FDCSPQ8NFU4 85 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 UBL5Q9BZL1 73 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 MORN5Q5VZ52 161 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 MCRIP2Q9BUT9 160 aaKnown RBP8.06□□□□□ -1.12
COL6A3-201ENST00000295550 CSRP1P21291 193 aaKnown RBP8.06□□□□□ -1.12
COL6A3-201ENST00000295550 PMVKQ15126 192 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 EGR2P11161 476 aaPredicted RBP8.06□□□□□ -1.12
COL6A3-201ENST00000295550 SPRR3Q9UBC9 169 aa8.06□□□□□ -1.12
COL6A3-201ENST00000295550 CD24P25063 80 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 DSCR8Q96T75 97 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 WDR83OSQ9Y284 106 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 ZNF876PQ49A33 203 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 C1orf43Q9BWL3 253 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 CCL3L1P16619 93 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 A0A087WWL8 130 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE12JA6NER3 117 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE4Q13068 117 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE5Q13069 117 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE6Q13070 117 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 BMPERQ8N8U9 685 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 C7orf69Q9H7B7 122 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 TRAV12-1A0A0B4J245 112 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 Q0VFX4 171 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 C1QTNF4Q9BXJ3 329 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 FCN3O75636 299 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 C9orf106Q8NAJ2 232 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 GFRA4Q9GZZ7 299 aa8.05□□□□□ -1.12
COL6A3-201ENST00000295550 A0A1B0GUS0 222 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 K7ERJ3 54 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 IGHG3P01860 377 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 SS18L2Q9UHA2 77 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 RPL36AP83881 106 aaKnown RBP8.04□□□□□ -1.12
COL6A3-201ENST00000295550 ZNF329Q86UD4 541 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 LY6G5BQ8NDX9 201 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 RPL36ALQ969Q0 106 aaKnown RBP8.04□□□□□ -1.12
COL6A3-201ENST00000295550 SPANXCQ9NY87 97 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 Q6P435 159 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 ZNF462Q96JM2 2506 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 ETDBQ3ZM63 59 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 SS18Q15532 418 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 AMN1Q8IY45 258 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 RPP25LQ8N5L8 163 aaKnown RBP8.04□□□□□ -1.12
COL6A3-201ENST00000295550 NEU4Q8WWR8 484 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-201ENST00000295550 C3orf36Q3SXR2 165 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 A0A1W2PPM0 123 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 IL18BPO95998 194 aa8.04□□□□□ -1.12
COL6A3-201ENST00000295550 TRAV40A0A0B4J280 105 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 TIMM23O14925 209 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 CRLF1O75462 422 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 ZNF581Q9P0T4 197 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 ACANP16112 2415 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 SRRM5B3KS81 715 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 E9PLN8 166 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 Q86TA4 180 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE7O76087 117 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE12FP0CL80 117 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE12GP0CL81 117 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 GAGE12IP0CL82 117 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 HGFACQ04756 655 aa8.03□□□□□ -1.12
COL6A3-201ENST00000295550 RPUSD1Q9UJJ7 312 aaKnown RBP8.03□□□□□ -1.12
COL6A3-201ENST00000295550 PSCAO43653 123 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms