RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TEX22C9J3V5 150 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 INS-IGF2F8WCM5 200 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 IGKV2D-40P01614 121 aaPredicted RBP10.01□□□□□ -0.81
LIG1-201ENST00000263274 GRNP28799 593 aaKnown RBP10.01□□□□□ -0.81
LIG1-201ENST00000263274 DLX6P56179 175 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 Q8TAT8 98 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 SMKR1H3BMG3 65 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 IFI27P40305 119 aaPredicted RBP10.01□□□□□ -0.81
LIG1-201ENST00000263274 RHOGP84095 191 aa10.01□□□□□ -0.81
LIG1-201ENST00000263274 CHCHD1Q96BP2 118 aaKnown RBP10.01□□□□□ -0.81
LIG1-201ENST00000263274 IGHV3-66A0A0C4DH42 116 aa10□□□□□ -0.81
LIG1-201ENST00000263274 TMEM189A5PLL7 270 aa10□□□□□ -0.81
LIG1-201ENST00000263274 FAM106CPP0CH98 169 aa10□□□□□ -0.81
LIG1-201ENST00000263274 FAM106AQ4KMX7 169 aa10□□□□□ -0.81
LIG1-201ENST00000263274 SAMD13Q5VXD3 122 aa10□□□□□ -0.81
LIG1-201ENST00000263274 AMN1Q8IY45 258 aa10□□□□□ -0.81
LIG1-201ENST00000263274 ORM1P02763 201 aa10□□□□□ -0.81
LIG1-201ENST00000263274 BVES-AS1Q5T3Y7 98 aa10□□□□□ -0.81
LIG1-201ENST00000263274 FAM71F2Q6NXP2 309 aa10□□□□□ -0.81
LIG1-201ENST00000263274 C12orf54Q6X4T0 127 aa10□□□□□ -0.81
LIG1-201ENST00000263274 ZNF492Q9P255 531 aa10□□□□□ -0.81
LIG1-201ENST00000263274 SOX21Q9Y651 276 aaPredicted RBP10□□□□□ -0.81
LIG1-201ENST00000263274 TRBV19A0A075B6N1 114 aa10□□□□□ -0.81
LIG1-201ENST00000263274 NPIPB5A8MRT5 1133 aa10□□□□□ -0.81
LIG1-201ENST00000263274 D6R8Y8 96 aa10□□□□□ -0.81
LIG1-201ENST00000263274 NCR2O95944 276 aa10□□□□□ -0.81
LIG1-201ENST00000263274 PPIFP30405 207 aaKnown RBP10□□□□□ -0.81
LIG1-201ENST00000263274 RPL24P83731 157 aaKnown RBP10□□□□□ -0.81
LIG1-201ENST00000263274 LYZL1Q6UWQ5 148 aa10□□□□□ -0.81
LIG1-201ENST00000263274 FER1L6-AS1Q8NA97 138 aa10□□□□□ -0.81
LIG1-201ENST00000263274 C18orf15Q96N68 181 aa10□□□□□ -0.81
LIG1-201ENST00000263274 IGHV3-49A0A0A0MS15 119 aa9.99□□□□□ -0.81
LIG1-201ENST00000263274 IGLV1-47P01700 117 aa9.99□□□□□ -0.81
LIG1-201ENST00000263274 RBPJQ06330 500 aa9.99□□□□□ -0.81
LIG1-201ENST00000263274 TWIST1Q15672 202 aa9.99□□□□□ -0.81
LIG1-201ENST00000263274 PEF1Q9UBV8 284 aaKnown RBP9.99□□□□□ -0.81
LIG1-201ENST00000263274 FBLL1A6NHQ2 334 aaKnown RBP9.99□□□□□ -0.81
LIG1-201ENST00000263274 I3L2K1 104 aa9.99□□□□□ -0.81
LIG1-201ENST00000263274 FAM120AOSQ5T036 256 aa9.99□□□□□ -0.81
LIG1-201ENST00000263274 OR10AG1Q8NH19 301 aa9.99□□□□□ -0.81
LIG1-201ENST00000263274 ST20Q9HBF5 79 aa9.99□□□□□ -0.81
LIG1-201ENST00000263274 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.99□□□□□ -0.811e-7■■■■□ 22.1
LIG1-201ENST00000263274 C7orf71A4D174 169 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 SMAGPQ0VAQ4 97 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 ZNF672Q499Z4 452 aaPredicted RBP9.98□□□□□ -0.81
LIG1-201ENST00000263274 RAB37Q96AX2 223 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 ZNF491Q8N8L2 437 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 PRELID3AQ96N28 172 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 SHANK2-AS3Q9BTD1 123 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 DPM3Q9P2X0 92 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 K7EIM0 57 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 NBR2O15453 112 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 HLA-DMBP28068 263 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 CKS2P33552 79 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 PAX2Q02962 417 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 LOXL1Q08397 574 aaPredicted RBP9.98□□□□□ -0.81
LIG1-201ENST00000263274 PSG3Q16557 428 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 CT83Q5H943 113 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 NDFIP1Q9BT67 221 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 GTSF1LQ9H1H1 148 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 KAAG1Q9UBP8 84 aa9.98□□□□□ -0.81
LIG1-201ENST00000263274 NMUP48645 174 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 DEFB125Q8N687 156 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 ZNF785A8K8V0 405 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 IGLV2-11P01706 119 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 TM4SF20Q53R12 229 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 TMEM75Q8N9X5 138 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 NEU4Q8WWR8 484 aaPredicted RBP9.97□□□□□ -0.81
LIG1-201ENST00000263274 HAX1O00165 279 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 MFAP4P55083 255 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 CACNG7P62955 275 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 PET117Q6UWS5 81 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 PRSS57Q6UWY2 283 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 GTF2H5Q6ZYL4 71 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 GFRA4Q9GZZ7 299 aa9.97□□□□□ -0.81
LIG1-201ENST00000263274 FAM231BA6NCW3 169 aa9.96□□□□□ -0.81
LIG1-201ENST00000263274 CRIP1P50238 77 aa9.96□□□□□ -0.81
LIG1-201ENST00000263274 SIGLEC15Q6ZMC9 328 aa9.96□□□□□ -0.81
LIG1-201ENST00000263274 Q8NA96 180 aa9.96□□□□□ -0.81
LIG1-201ENST00000263274 ZNF48Q96MX3 618 aaPredicted RBP9.96□□□□□ -0.81
LIG1-201ENST00000263274 RAXQ9Y2V3 346 aa9.96□□□□□ -0.81
LIG1-201ENST00000263274 H3BUT2 72 aa9.96□□□□□ -0.82
LIG1-201ENST00000263274 GPR183P32249 361 aa9.96□□□□□ -0.82
LIG1-201ENST00000263274 PLP1P60201 277 aa9.96□□□□□ -0.82
LIG1-201ENST00000263274 ECSCRQ19T08 205 aa9.96□□□□□ -0.82
LIG1-201ENST00000263274 IGF2-ASQ6U949 168 aa9.96□□□□□ -0.82
LIG1-201ENST00000263274 TNFRSF13BO14836 293 aaPredicted RBP9.95□□□□□ -0.82
LIG1-201ENST00000263274 ZNF207O43670 478 aaKnown RBP9.95□□□□□ -0.82
LIG1-201ENST00000263274 CRYGBP07316 175 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 TIMD4Q96H15 378 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 CITED1Q99966 193 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 CENPEQ02224 2701 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 SH2D1AO60880 128 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 C8orf31Q8N9H6 132 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 ZNF414Q96IQ9 312 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 C21orf62Q9NYP8 219 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 CCL21O00585 134 aa9.95□□□□□ -0.82
LIG1-201ENST00000263274 H3BRN7 92 aa9.94□□□□□ -0.82
LIG1-201ENST00000263274 CEACAM3P40198 252 aa9.94□□□□□ -0.82
LIG1-201ENST00000263274 THYN1Q9P016 225 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms