RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IGLV3-1P01715 115 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 NTN5Q8WTR8 489 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-220ENST00000641603 C16orf97H3BN30 126 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 CTSBP07858 339 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 RNASE2P10153 161 aaKnown RBP3.79□□□□□ -1.8
SCN1A-220ENST00000641603 ZFP36L1Q07352 338 aaKnown RBP3.79□□□□□ -1.8
SCN1A-220ENST00000641603 TRBV19A0A075B6N1 114 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 ITLN1Q8WWA0 313 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 CCL13Q99616 98 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 IGKV1-12A0A0C4DH73 117 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 IGKV1D-12P01611 117 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 C11orf1Q9H5F2 150 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 MRPL35Q9NZE8 188 aaKnown RBP3.79□□□□□ -1.8
SCN1A-220ENST00000641603 FAM236AA0A1B0GUQ0 79 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 FAM236BA0A1B0GV22 79 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 B9A039 149 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 IGLV3-19P01714 112 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 SIT1Q9Y3P8 196 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 IGHV3-64DA0A0J9YX35 117 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 JMJD7-PLA2G4BH0Y9G9 81 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 NDUFA7O95182 113 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 ARMS2P0C7Q2 107 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 DOCK11Q5JSL3 2073 aa3.79□□□□□ -1.8
SCN1A-220ENST00000641603 BRCA1P38398 1863 aaKnown RBP3.79□□□□□ -1.8
SCN1A-220ENST00000641603 ITGBL1O95965 494 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-220ENST00000641603 KIF26BQ2KJY2 2108 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 A0A0J9YXY3 114 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 MALP21145 153 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 GUSBP11Q6P575 273 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 ZNF474Q6S9Z5 364 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-220ENST00000641603 MRPL55Q7Z7F7 128 aaKnown RBP3.78□□□□□ -1.8
SCN1A-220ENST00000641603 TMEM133Q9H2Q1 129 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 IGKV1-27A0A075B6S5 117 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 MED14OSP0DP75 135 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 ATRXP46100 2492 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 DOCK7Q96N67 2140 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 ZSWIM8A7E2V4 1837 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 IGHV1OR15-9A0A0B4J2B8 117 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 PCOLCEQ15113 449 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 NDUFA4L2Q9NRX3 87 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 A0A1B0GUS0 222 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 CRYGCP07315 174 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 CCL8P80075 99 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 DOCK6Q96HP0 2047 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 ZNF318Q5VUA4 2279 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 A0A1B0GX51 115 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 IGF2BP2-AS1Q96M15 143 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 ZNF114Q8NC26 417 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 P0DMU3 169 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 FAM231AP0DMU4 169 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 FAM231CP0DMU5 169 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 COX6A1P12074 109 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 TCF15Q12870 199 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 CD59P13987 128 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 CR1LQ2VPA4 569 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 RNF183Q96D59 192 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 DUX3Q96PT4 197 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 TP73-AS1Q9UF72 201 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 A0A0G2JRQ6 117 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 IGKV1D-33P01593 117 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 IGKV1-33P01594 117 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 RBM3P98179 157 aaKnown RBP3.78□□□□□ -1.8
SCN1A-220ENST00000641603 Q6ZRM9 215 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 DTX2Q86UW9 622 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 LYPD6Q86Y78 171 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 SSC4DQ8WTU2 575 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 ASCC3Q8N3C0 2202 aaKnown RBP3.78□□□□□ -1.8
SCN1A-220ENST00000641603 AHCTF1Q8WYP5 2266 aa3.78□□□□□ -1.8
SCN1A-220ENST00000641603 IGHV3OR15-7A0A075B7D8 119 aa3.78□□□□□ -1.81
SCN1A-220ENST00000641603 TGFAP01135 160 aa3.78□□□□□ -1.81
SCN1A-220ENST00000641603 ANK1P16157 1881 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 I3L3M4 83 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 PSG7Q13046 419 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 C5orf24Q7Z6I8 188 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 CYYR1Q96J86 154 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 TRAV12-3A0A0B4J271 114 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 CCL11P51671 97 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 CT55Q8WUE5 264 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 ARHGEF17Q96PE2 2063 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-220ENST00000641603 IGHV5-10-1A0A0J9YXX1 117 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 C3orf36Q3SXR2 165 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 FAM74A4Q5TZK3 123 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 SRXN1Q9BYN0 137 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 SNRNP200O75643 2136 aaKnown RBP3.77□□□□□ -1.81
SCN1A-220ENST00000641603 PEAR1Q5VY43 1037 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-220ENST00000641603 LINC00311Q8N616 119 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 FLVCR1-AS1Q8TAF5 88 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 F6UB75 175 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 K7EN84 100 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 NDUFA12Q9UI09 145 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 CFHR2P36980 270 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 PRR25Q96S07 402 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 TIMM17AQ99595 171 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 DNAJC13O75165 2243 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 SDHAF1A6NFY7 115 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 NCR2O95944 276 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 ECSCRQ19T08 205 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 TRBV7-1A0A0A6YYK4 115 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 C11orf86A6NJI1 115 aa3.77□□□□□ -1.81
SCN1A-220ENST00000641603 HERVK_113P63121 156 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms