RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 C11orf94C9JXX5 98 aa8.39□□□□□ -1.07
CLN3-257ENST00000637110 SSNA1O43805 119 aa8.39□□□□□ -1.07
CLN3-257ENST00000637110 PRAF2O60831 178 aa8.39□□□□□ -1.07
CLN3-257ENST00000637110 SNRPCP09234 159 aaKnown RBP8.39□□□□□ -1.07
CLN3-257ENST00000637110 ZNF705DP0CH99 300 aaPredicted RBP8.39□□□□□ -1.07
CLN3-257ENST00000637110 ZNF705BP0CI00 300 aaPredicted RBP8.39□□□□□ -1.07
CLN3-257ENST00000637110 RHOBP62745 196 aa8.39□□□□□ -1.07
CLN3-257ENST00000637110 MIC13Q5XKP0 118 aa8.39□□□□□ -1.07
CLN3-257ENST00000637110 ZNF767PQ75MW2 155 aa8.39□□□□□ -1.07
CLN3-257ENST00000637110 CLUHP3Q96NS8 147 aa8.39□□□□□ -1.07
CLN3-257ENST00000637110 HRH4Q9H3N8 390 aa8.39□□□□□ -1.07
CLN3-257ENST00000637110 SMIM9A6NGZ8 99 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 FGF7P21781 194 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 CNN1P51911 297 aaKnown RBP8.38□□□□□ -1.07
CLN3-257ENST00000637110 HIST1H1AQ02539 215 aaPredicted RBP8.38□□□□□ -1.07
CLN3-257ENST00000637110 ATP6V1FQ16864 119 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 LINC00336Q6ZUF6 198 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 BPIFA4PQ86YQ2 179 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 OR1L4Q8NGR5 311 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 C17orf77Q96MU5 243 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 C11orf1Q9H5F2 150 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 DNAJC4Q9NNZ3 241 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 WDR83OSQ9Y284 106 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 RFNGQ9Y644 331 aa8.38□□□□□ -1.07
CLN3-257ENST00000637110 A0A087X0K7 114 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 TRAV10A0A0B4J240 114 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 TMEM189A5PLL7 270 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 H3BTX0 84 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 HBE1P02100 147 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 PRB4P10163 310 aaPredicted RBP8.37□□□□□ -1.07
CLN3-257ENST00000637110 B2MP61769 119 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 CYCSP99999 105 aaKnown RBP8.37□□□□□ -1.07
CLN3-257ENST00000637110 IL15RAQ13261 267 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 PSG3Q16557 428 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 SPINK13Q1W4C9 94 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 ZNF705AQ6ZN79 300 aaPredicted RBP8.37□□□□□ -1.07
CLN3-257ENST00000637110 Q6ZTC4 211 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 ZNF709Q8N972 641 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 TMEM37Q8WXS4 190 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 PFDN5Q99471 154 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 SLC25A31Q9H0C2 315 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 CELA1Q9UNI1 258 aa8.37□□□□□ -1.07
CLN3-257ENST00000637110 TRAV5A0A0B4J249 113 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 E5RGE8 158 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 M0R2Z0 102 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 INSP01308 110 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 AMBPP02760 352 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 SPART-AS1P0CW21 52 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 CXCL3P19876 107 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 NHLH2Q02577 135 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 OPCMLQ14982 345 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 RRN3P1Q2M238 152 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 LCN15Q6UWW0 184 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 OR11H7Q8NGC8 314 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 RPUSD4Q96CM3 377 aaKnown RBP8.36□□□□□ -1.07
CLN3-257ENST00000637110 NEU1Q99519 415 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 SLC50A1Q9BRV3 221 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 NMES1Q9C002 83 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 SLC39A9Q9NUM3 307 aa8.36□□□□□ -1.07
CLN3-257ENST00000637110 DEFB131BA0A096LNP1 70 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 LOC102723971A0A1B0GUV8 181 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 ZNF705FA8MVS1 300 aaPredicted RBP8.35□□□□□ -1.07
CLN3-257ENST00000637110 CXCL2P19875 107 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 RPL29P47914 159 aaKnown RBP8.35□□□□□ -1.07
CLN3-257ENST00000637110 TCTAP57738 103 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 PRR20EP86478 221 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 PRR20CP86479 221 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 PRR20DP86480 221 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 PRR20BP86481 221 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 PRR20AP86496 221 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 CLINT1Q14677 625 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 VWC2Q2TAL6 325 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 C12orf74Q32Q52 190 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 C1orf158Q8N1D5 194 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 OR8A1Q8NGG7 326 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 OR5C1Q8NGR4 320 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 THAP6Q8TBB0 222 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 IGF2BP2-AS1Q96M15 143 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 MARVELD1Q9BSK0 173 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 PLA2G2EQ9NZK7 142 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 OR5AC2Q9NZP5 309 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 PXMP4Q9Y6I8 212 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 PKHD1P08F94 4074 aa8.35□□□□□ -1.07
CLN3-257ENST00000637110 TRAV12-2A0A075B6T6 113 aa8.34□□□□□ -1.07
CLN3-257ENST00000637110 BOLA2-SMG1P6H3BVE0 249 aa8.34□□□□□ -1.07
CLN3-257ENST00000637110 MRPS12O15235 138 aaKnown RBP8.34□□□□□ -1.07
CLN3-257ENST00000637110 MPDU1O75352 247 aa8.34□□□□□ -1.07
CLN3-257ENST00000637110 FAM222AQ5U5X8 452 aa8.34□□□□□ -1.07
CLN3-257ENST00000637110 MORN5Q5VZ52 161 aa8.34□□□□□ -1.07
CLN3-257ENST00000637110 AMTNQ6UX39 209 aa8.34□□□□□ -1.07
CLN3-257ENST00000637110 BAP18Q8IXM2 172 aa8.34□□□□□ -1.07
CLN3-257ENST00000637110 OR10J6PQ8NGY7 276 aa8.34□□□□□ -1.07
CLN3-257ENST00000637110 ZNF331Q9NQX6 463 aaPredicted RBP8.34□□□□□ -1.07
CLN3-257ENST00000637110 IGHV4-4A0A075B6R2 117 aa8.33□□□□□ -1.08
CLN3-257ENST00000637110 TEX48A0A1B0GUV7 120 aa8.33□□□□□ -1.08
CLN3-257ENST00000637110 ZNF705GA8MUZ8 300 aaPredicted RBP8.33□□□□□ -1.08
CLN3-257ENST00000637110 PET100P0DJ07 73 aa8.33□□□□□ -1.08
CLN3-257ENST00000637110 HTN1P15515 57 aa8.33□□□□□ -1.08
CLN3-257ENST00000637110 HTN3P15516 51 aa8.33□□□□□ -1.08
CLN3-257ENST00000637110 PPP1R1CQ8WVI7 109 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms