RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TRAV6A0A075B6T7 132 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 IL5P05113 134 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 NAT1P18440 290 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 MEOX2P50222 304 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 SPCS3P61009 180 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 ZNF90Q03938 601 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 ETFRF1Q6IPR1 90 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 RNF182Q8N6D2 247 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 TP53RKQ96S44 253 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 RSG1Q9BU20 258 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 NUDT15Q9NV35 164 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 MCUBQ9NWR8 336 aa9.78□□□□□ -0.84
CLN3-249ENST00000636685 TRAV9-2A0A087WT02 112 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 LRCOL1A6NCL2 159 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 ZNF98A6NK75 572 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 RLN2P04090 185 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 CCR6P51684 374 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 TSPAN5P62079 268 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 HYLS1Q96M11 299 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 SLC25A32Q9H2D1 315 aa9.77□□□□□ -0.85
CLN3-249ENST00000636685 GPN1Q9HCN4 374 aaPredicted RBP9.77□□□□□ -0.85
CLN3-249ENST00000636685 TRAV8-2A0A0B4J237 113 aa9.76□□□□□ -0.85
CLN3-249ENST00000636685 RGS13O14921 159 aa9.76□□□□□ -0.85
CLN3-249ENST00000636685 AKAIN1P0CW23 69 aa9.76□□□□□ -0.85
CLN3-249ENST00000636685 PRB4P10163 310 aaPredicted RBP9.76□□□□□ -0.85
CLN3-249ENST00000636685 NKX2-5P52952 324 aaPredicted RBP9.76□□□□□ -0.85
CLN3-249ENST00000636685 RHOBP62745 196 aa9.76□□□□□ -0.85
CLN3-249ENST00000636685 GAMTQ14353 236 aa9.76□□□□□ -0.85
CLN3-249ENST00000636685 TMEM229BQ8NBD8 167 aa9.76□□□□□ -0.85
CLN3-249ENST00000636685 GPX8Q8TED1 209 aa9.76□□□□□ -0.85
CLN3-249ENST00000636685 LY96Q9Y6Y9 160 aa9.76□□□□□ -0.85
CLN3-249ENST00000636685 IGKV1D-37A0A075B6S9 117 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 SNRPGP15A8MWD9 76 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 PI3P19957 117 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 RCVRNP35243 200 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 GALR1P47211 349 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 UCP3P55916 312 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 HIST1H1AQ02539 215 aaPredicted RBP9.75□□□□□ -0.85
CLN3-249ENST00000636685 OR2F1Q13607 317 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 Q6ZSA8 131 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 Q6ZTI0 123 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 ARRDC1Q8N5I2 433 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 LINC00467Q9BRT7 94 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 C20orf85Q9H1P6 137 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 SLC25A22Q9H936 323 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 PPP1R14DQ9NXH3 145 aa9.75□□□□□ -0.85
CLN3-249ENST00000636685 ZFP92A6NM28 416 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 ATG12O94817 140 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 NDUFB6O95139 128 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 ANXA3P12429 323 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 TAS2R19P59542 299 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 IFITM2Q01629 132 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 SP6Q3SY56 376 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 AARDQ4LEZ3 155 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 Q8N814 137 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 ZNF738Q8NE65 137 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 OR52E5Q8NH55 327 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 RNASE11Q8TAA1 199 aaKnown RBP9.74□□□□□ -0.85
CLN3-249ENST00000636685 ZFAND1Q8TCF1 268 aa9.74□□□□□ -0.85
CLN3-249ENST00000636685 RRNAD1Q96FB5 475 aaKnown RBP9.74□□□□□ -0.85
CLN3-249ENST00000636685 CEBPZOSA8MTT3 80 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 SNURFLB1AK76 121 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 H7BYZ3 331 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 SSNA1O43805 119 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 ATP6V1G1O75348 118 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 SULT1A3P0DMM9 295 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 SULT1A4P0DMN0 295 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 PGAM2P15259 253 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 RND3P61587 244 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 KIR3DS1Q14943 382 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 STEAP1BQ6NZ63 245 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 LYPD5Q6UWN5 251 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 ICOSQ9Y6W8 199 aa9.73□□□□□ -0.85
CLN3-249ENST00000636685 C3orf85A0A1B0GTC6 90 aa9.72□□□□□ -0.85
CLN3-249ENST00000636685 PSCAO43653 123 aa9.72□□□□□ -0.85
CLN3-249ENST00000636685 PIGPP57054 158 aa9.72□□□□□ -0.85
CLN3-249ENST00000636685 MEF2DQ14814 521 aa9.72□□□□□ -0.85
CLN3-249ENST00000636685 WFDC10BQ8IUB3 73 aa9.72□□□□□ -0.85
CLN3-249ENST00000636685 CCDC28AQ8IWP9 274 aa9.72□□□□□ -0.85
CLN3-249ENST00000636685 OR8A1Q8NGG7 326 aa9.72□□□□□ -0.85
CLN3-249ENST00000636685 SLC25A21Q9BQT8 299 aaPredicted RBP9.72□□□□□ -0.85
CLN3-249ENST00000636685 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.72□□□□□ -0.85
CLN3-249ENST00000636685 SCP2D1Q9UJQ7 156 aa9.72□□□□□ -0.85
CLN3-249ENST00000636685 DISC1C4P0D8 188 aa9.71□□□□□ -0.86
CLN3-249ENST00000636685 RAB3DO95716 219 aa9.71□□□□□ -0.86
CLN3-249ENST00000636685 OR5AC1P0C628 307 aa9.71□□□□□ -0.86
CLN3-249ENST00000636685 CDKN1BP46527 198 aa9.71□□□□□ -0.86
CLN3-249ENST00000636685 FGL1Q08830 312 aa9.71□□□□□ -0.86
CLN3-249ENST00000636685 NMSQ5H8A3 153 aa9.71□□□□□ -0.86
CLN3-249ENST00000636685 FLVCR2Q9UPI3 526 aa9.71□□□□□ -0.86
CLN3-249ENST00000636685 TRGV2A0A075B6R0 118 aa9.7□□□□□ -0.86
CLN3-249ENST00000636685 PAX4O43316 350 aa9.7□□□□□ -0.86
CLN3-249ENST00000636685 TBPP20226 339 aa9.7□□□□□ -0.86
CLN3-249ENST00000636685 EVI2AP22794 236 aa9.7□□□□□ -0.86
CLN3-249ENST00000636685 S100A1P23297 94 aa9.7□□□□□ -0.86
CLN3-249ENST00000636685 ASIPP42127 132 aa9.7□□□□□ -0.86
CLN3-249ENST00000636685 ZNF431Q8TF32 576 aaPredicted RBP9.7□□□□□ -0.86
CLN3-249ENST00000636685 ASB13Q8WXK3 278 aa9.7□□□□□ -0.86
CLN3-249ENST00000636685 IL22RA2Q969J5 263 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms