RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SLC25A5P05141 298 aaKnown RBP8.12□□□□□ -1.11
CLN3-248ENST00000636355 RPLP1P05386 114 aaKnown RBP8.12□□□□□ -1.11
CLN3-248ENST00000636355 ATRAIDQ6UW56 229 aa8.12□□□□□ -1.11
CLN3-248ENST00000636355 LINC01551Q86U37 167 aa8.12□□□□□ -1.11
CLN3-248ENST00000636355 CMTM2Q8TAZ6 248 aa8.12□□□□□ -1.11
CLN3-248ENST00000636355 GLMPQ8WWB7 406 aa8.12□□□□□ -1.11
CLN3-248ENST00000636355 ANAPC16Q96DE5 110 aa8.12□□□□□ -1.11
CLN3-248ENST00000636355 EPDR1Q9UM22 224 aa8.12□□□□□ -1.11
CLN3-248ENST00000636355 TRBV20OR9-2A0A075B6H5 130 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 HELTA6NFD8 242 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 TRBV12-3P01733 135 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 IGHV3-11P01762 117 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 TCRAP04437 139 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 GNG4P50150 75 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 RANP62826 216 aaKnown RBP8.11□□□□□ -1.11
CLN3-248ENST00000636355 RPL23P62829 140 aaKnown RBP8.11□□□□□ -1.11
CLN3-248ENST00000636355 ADIRFQ15847 76 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 TMEM183BQ1AE95 376 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 RPEL1Q2QD12 228 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 C16orf54Q6UWD8 224 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 TMEM75Q8N9X5 138 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 BLNKQ8WV28 456 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 IGF2BP2-AS1Q96M15 143 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 DUX5Q96PT3 197 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 DERL1Q9BUN8 251 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 RPS10P5Q9NQ39 176 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 BIN3Q9NQY0 253 aa8.11□□□□□ -1.11
CLN3-248ENST00000636355 PGPA6NDG6 321 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 DNASE2O00115 360 aaPredicted RBP8.1□□□□□ -1.11
CLN3-248ENST00000636355 SCO1O75880 301 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 CSN1S1P47710 185 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 UBE2G1P62253 170 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 BTN1A1Q13410 526 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 CENPWQ5EE01 88 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 C1QL4Q86Z23 238 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 C15orf54Q8N8G6 183 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 ISOC2Q96AB3 205 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 C20orf24Q9BUV8 137 aa8.1□□□□□ -1.11
CLN3-248ENST00000636355 ZNF331Q9NQX6 463 aaPredicted RBP8.1□□□□□ -1.11
CLN3-248ENST00000636355 HIVEP1P15822 2718 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 IGHV3-35A0A0C4DH35 117 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 IGHV7-4-1A0A0J9YVY3 117 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 A0A1B0GUS0 222 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 RBAKDNA6NC62 111 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 TCF21O43680 179 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 UNQ9165/PRO28630Q6UXU0 137 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 BTF3L4Q96K17 158 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 IMMP2LQ96T52 175 aa8.09□□□□□ -1.11
CLN3-248ENST00000636355 H7BYZ3 331 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 SLC17A3O00476 420 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 LTAP01374 205 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 C10orf99Q6UWK7 81 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 LCNL1Q6ZST4 164 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 Q86TA4 180 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 CBLN2Q8IUK8 224 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 SFRP2Q96HF1 295 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 SMR3AQ99954 134 aa8.08□□□□□ -1.12
CLN3-248ENST00000636355 TRAV9-1A0A075B6T8 112 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 INAFM1C9JVW0 142 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 LINC01619G3V211 115 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 ISLRO14498 428 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 CRLF1O75462 422 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 HOXD3P31249 432 aaPredicted RBP8.07□□□□□ -1.12
CLN3-248ENST00000636355 RNF212Q495C1 297 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 TMEM88Q6PEY1 159 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 FAM231DQ6ZW35 169 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 LINC01006Q8NI28 216 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 NRN1Q9NPD7 142 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 PEMTQ9UBM1 199 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 SMPXQ9UHP9 88 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 ZFP30Q9Y2G7 519 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 SMAD5-AS1Q9Y6J3 95 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 F8P00451 2351 aa8.07□□□□□ -1.12
CLN3-248ENST00000636355 FN1P02751 2386 aaKnown RBP8.06□□□□□ -1.12
CLN3-248ENST00000636355 IGHV4OR15-8A0A075B7B6 117 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 IGHV3OR16-8A0A075B7F1 116 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 A0A087WW49 117 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 ZNF320A2RRD8 509 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 TMEM213A2RRL7 107 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 ZNF785A8K8V0 405 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 DIRC3C9JPN6 131 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 M0QZ24 198 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 CHEK1O14757 476 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 GCGP01275 180 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 S100PP25815 95 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 GNG5P63218 68 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 FHL3Q13643 280 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 KLF5Q13887 457 aaPredicted RBP8.06□□□□□ -1.12
CLN3-248ENST00000636355 PSG3Q16557 428 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 TCTEX1D4Q5JR98 221 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 C8orf86Q6ZUL3 223 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 COX8CQ7Z4L0 72 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 EXOC3-AS1Q8N2X6 119 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 OCC1Q8TAD7 63 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 YPEL4Q96NS1 127 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 OR5B12Q96R08 314 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 RHPN1-AS1Q9BWJ2 59 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 OSTCQ9NRP0 149 aa8.06□□□□□ -1.12
CLN3-248ENST00000636355 TSSC4Q9Y5U2 329 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms