RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 CUBNO60494 3623 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 DYNC1H1Q14204 4646 aaKnown RBP-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 PLXND1Q9Y4D7 1925 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 NUP155O75694 1391 aa-1.35□□□□□ -2.63
SCN1A-211ENST00000635893 NEO1Q92859 1461 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 A0A087WSZ3 146 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 TPM1P09493 284 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 WRNQ14191 1432 aaPredicted RBP eCLIP-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 ITPR1Q14643 2758 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 SPOPLQ6IQ16 392 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 C8orf74Q6P047 294 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 PATE2Q6UY27 113 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 PDZD9Q8IXQ8 264 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 C19orf60Q96EN9 201 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 LINC00467Q9BRT7 94 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 SPTBN1Q01082 2364 aaKnown RBP-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 NBEAL2Q6ZNJ1 2754 aa-1.36□□□□□ -2.63
SCN1A-211ENST00000635893 A8MWV9 139 aa-1.37□□□□□ -2.63
SCN1A-211ENST00000635893 PSMD12O00232 456 aaPredicted RBP-1.37□□□□□ -2.63
SCN1A-211ENST00000635893 YKT6O15498 198 aa-1.37□□□□□ -2.63
SCN1A-211ENST00000635893 OCMP0CE72 109 aaPredicted RBP-1.37□□□□□ -2.63
SCN1A-211ENST00000635893 CD79AP11912 226 aa-1.37□□□□□ -2.63
SCN1A-211ENST00000635893 PSMB6P28072 239 aa-1.37□□□□□ -2.63
SCN1A-211ENST00000635893 SPG11Q96JI7 2443 aa-1.37□□□□□ -2.63
SCN1A-211ENST00000635893 MTORP42345 2549 aa-1.37□□□□□ -2.63
SCN1A-211ENST00000635893 MGAM2Q2M2H8 2515 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 TRAV26-2A0A0B4J265 109 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 PRORSD1PA6NEY8 169 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 M0QZ92 97 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 M0R233 179 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 PIRO00625 290 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 CFDP00746 253 aaPredicted RBP-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 PPIBP23284 216 aaKnown RBP-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 KRT222Q8N1A0 295 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 STAG3L4Q8TBR4 150 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 TMEM126AQ9H061 195 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 TMEM133Q9H2Q1 129 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 ROBO3Q96MS0 1386 aa-1.38□□□□□ -2.63
SCN1A-211ENST00000635893 OR4C46A6NHA9 309 aa-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 H0Y980 276 aa-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 CYB5BO43169 146 aa-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 IGLV1-51P01701 117 aa-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 SRIP30626 198 aa-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 HADHBP55084 474 aaKnown RBP-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 EIF5AP63241 154 aaKnown RBP-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 ZNF56Q15929 161 aa-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 SLC25A21Q9BQT8 299 aaPredicted RBP-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 CCDC90BQ9GZT6 254 aa-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 LSM5Q9Y4Y9 91 aaKnown RBP-1.39□□□□□ -2.63
SCN1A-211ENST00000635893 URB1O60287 2271 aaKnown RBP-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 DNAH9Q9NYC9 4486 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 APOBP04114 4563 aaKnown RBP-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 TGIF2-C20orf24A0A0A6YYL0 155 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 NDUFB3O43676 98 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 APOEP02649 317 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 RBP1P09455 135 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 SMIM17P0DL12 118 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 DEFA3P59666 94 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 PSME3P61289 254 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 OR51A2Q8NGJ7 313 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 FAM172AQ8WUF8 416 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 MALSU1Q96EH3 234 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 FGFR1OP2Q9NVK5 253 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 MRPL27Q9P0M9 148 aaKnown RBP-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 DNAH1Q9P2D7 4330 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 CCDC168Q8NDH2 2452 aa-1.4□□□□□ -2.63
SCN1A-211ENST00000635893 LRRK2Q5S007 2527 aa-1.41□□□□□ -2.63
SCN1A-211ENST00000635893 OR7C1O76099 320 aaPredicted RBP-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 PDE6GP18545 87 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 SPAG11BQ08648 103 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 ESPL1Q14674 2120 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 TMEM14EPQ6UXP3 125 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 C10orf111Q8N326 155 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 C12orf45Q8N5I9 185 aaPredicted RBP-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 LINC00208Q96KT6 92 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 C2orf50Q96LR7 162 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 OR52E6Q96RD3 313 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 DRC3Q9H069 523 aa-1.41□□□□□ -2.64
SCN1A-211ENST00000635893 PTPRDP23468 1912 aa-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 FAM236DA0A1B0GTK5 79 aa-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 FAM236CP0DP71 79 aa-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 SRP14P37108 136 aaKnown RBP-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 SPCS3P61009 180 aa-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 CLEC6AQ6EIG7 209 aa-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 POP5Q969H6 163 aaKnown RBP-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 Q96NJ1 140 aa-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 SPRR2FQ96RM1 72 aa-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 NBASA2RRP1 2371 aa-1.42□□□□□ -2.64
SCN1A-211ENST00000635893 RTL1A6NKG5 1358 aa-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 SACSQ9NZJ4 4579 aa-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 TRGV10A0A0A0MS01 117 aa-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 A0A1W2PRS3 328 aa-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 C9orf170A2RU37 121 aa-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 C17orf112F2Z3M2 114 aa-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 CALUO43852 315 aaPredicted RBP-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 DEFB109BQ30KR1 87 aa-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 ACOT6Q3I5F7 207 aaPredicted RBP-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 OGFRL1Q5TC84 451 aaPredicted RBP-1.43□□□□□ -2.64
SCN1A-211ENST00000635893 CD200R1LQ6Q8B3 271 aa-1.43□□□□□ -2.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms