RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 TMEM213A2RRL7 107 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 ENSAO43768 121 aaKnown RBP11.17□□□□□ -0.62
LDB3-209ENST00000623056 RPL27AP46776 148 aaKnown RBP11.17□□□□□ -0.62
LDB3-209ENST00000623056 PAX8Q06710 450 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 TM4SF20Q53R12 229 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 IFI27L1Q96BM0 104 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 CNOT1A5YKK6 2376 aaKnown RBP11.17□□□□□ -0.62
LDB3-209ENST00000623056 WT1P19544 449 aaPredicted RBP11.17□□□□□ -0.62
LDB3-209ENST00000623056 TCF15Q12870 199 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 SAMD5Q5TGI4 173 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 SAMD13Q5VXD3 122 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 FAM104BQ5XKR9 115 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 SEM1Q6ZVN7 128 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 ORMDL3Q8N138 153 aa11.17□□□□□ -0.62
LDB3-209ENST00000623056 TRBV19A0A075B6N1 114 aa11.16□□□□□ -0.62
LDB3-209ENST00000623056 NKX2-8O15522 239 aa11.16□□□□□ -0.62
LDB3-209ENST00000623056 PSG3Q16557 428 aa11.16□□□□□ -0.62
LDB3-209ENST00000623056 ZNF474Q6S9Z5 364 aaPredicted RBP11.16□□□□□ -0.62
LDB3-209ENST00000623056 LYZL1Q6UWQ5 148 aa11.16□□□□□ -0.62
LDB3-209ENST00000623056 LINC00311Q8N616 119 aa11.16□□□□□ -0.62
LDB3-209ENST00000623056 ZFHX2Q9C0A1 2572 aaPredicted RBP11.16□□□□□ -0.62
LDB3-209ENST00000623056 LAMA5O15230 3695 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 SMIM13P0DJ93 91 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 MC5RP33032 325 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 CCL11P51671 97 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 CCL8P80075 99 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 RPL24P83731 157 aaKnown RBP11.15□□□□□ -0.62
LDB3-209ENST00000623056 NGBQ9NPG2 151 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 DKK2Q9UBU2 259 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 TMSB15BA0A087X1C1 80 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 TEX48A0A1B0GUV7 120 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 K7EQM0 130 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 NDUFS7O75251 213 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 PPIAL4GP0DN37 164 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 MRPL51Q4U2R6 128 aaKnown RBP11.15□□□□□ -0.62
LDB3-209ENST00000623056 SIGLEC15Q6ZMC9 328 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 C8orf49Q96NF6 230 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 TMEM133Q9H2Q1 129 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 ZNF292O60281 2723 aa11.15□□□□□ -0.62
LDB3-209ENST00000623056 SMG1Q96Q15 3661 aaKnown RBP11.14□□□□□ -0.63
LDB3-209ENST00000623056 GNG7O60262 68 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 GOSR1O95249 250 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 CNTFRP26992 372 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 C1orf185Q5T7R7 199 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 WFDC3Q8IUB2 231 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 C8orf31Q8N9H6 132 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 FDCSPQ8NFU4 85 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 RBP4P02753 201 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 GCSHP23434 173 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 FCGR2BP31994 310 aaPredicted RBP11.14□□□□□ -0.63
LDB3-209ENST00000623056 FXYD2P54710 66 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 SCNM1Q9BWG6 230 aa11.14□□□□□ -0.63
LDB3-209ENST00000623056 PPIAL4CA0A0B4J2A2 164 aa11.13□□□□□ -0.63
LDB3-209ENST00000623056 SMKR1H3BMG3 65 aa11.13□□□□□ -0.63
LDB3-209ENST00000623056 CT45A10P0DMU9 189 aa11.13□□□□□ -0.63
LDB3-209ENST00000623056 RASL11BQ9BPW5 248 aa11.13□□□□□ -0.63
LDB3-209ENST00000623056 SPOCK3Q9BQ16 436 aa11.13□□□□□ -0.63
LDB3-209ENST00000623056 SHANK2-AS3Q9BTD1 123 aa11.13□□□□□ -0.63
LDB3-209ENST00000623056 RIF1Q5UIP0 2472 aaKnown RBP11.13□□□□□ -0.63
LDB3-209ENST00000623056 NPYP01303 97 aa11.13□□□□□ -0.63
LDB3-209ENST00000623056 C3orf36Q3SXR2 165 aa11.13□□□□□ -0.63
LDB3-209ENST00000623056 BCL6BQ8N143 479 aaPredicted RBP11.13□□□□□ -0.63
LDB3-209ENST00000623056 WI2-2373I1.2A0A1W2PRP0 233 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 TMEM189A5PLL7 270 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 MBD3L4A6NDZ8 208 aaPredicted RBP11.12□□□□□ -0.63
LDB3-209ENST00000623056 MBD3L3A6NE82 208 aaPredicted RBP11.12□□□□□ -0.63
LDB3-209ENST00000623056 MBD3L5A6NJ08 208 aaPredicted RBP11.12□□□□□ -0.63
LDB3-209ENST00000623056 TEX22C9J3V5 150 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 M0R3E3 92 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 IGKV1-17P01599 117 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 CRYGBP07316 175 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 MBD3L2Q8NHZ7 208 aaPredicted RBP11.12□□□□□ -0.63
LDB3-209ENST00000623056 TMEM190Q8WZ59 177 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 IGKV2D-26A0A0A0MRZ7 120 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 H3BRN7 92 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 I3L2K1 104 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 K7ERJ3 54 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 CKS2P33552 79 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 C22orf34Q6ZV56 151 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 LYPD1Q8N2G4 141 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 C18orf15Q96N68 181 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 SIGLEC9Q9Y336 463 aa11.12□□□□□ -0.63
LDB3-209ENST00000623056 TRAV17A0A0B4J275 112 aa11.11□□□□□ -0.63
LDB3-209ENST00000623056 AZU1P20160 251 aa11.11□□□□□ -0.63
LDB3-209ENST00000623056 LYPD2Q6UXB3 125 aa11.11□□□□□ -0.63
LDB3-209ENST00000623056 HIGD1BQ9P298 99 aa11.11□□□□□ -0.63
LDB3-209ENST00000623056 K7EM74 188 aa11.1□□□□□ -0.63
LDB3-209ENST00000623056 SH2D1AO60880 128 aa11.1□□□□□ -0.63
LDB3-209ENST00000623056 PIFOQ8TCI5 191 aa11.1□□□□□ -0.63
LDB3-209ENST00000623056 TTTY13Q9BZ97 58 aa11.1□□□□□ -0.63
LDB3-209ENST00000623056 GTSF1LQ9H1H1 148 aa11.1□□□□□ -0.63
LDB3-209ENST00000623056 DLX6P56179 175 aa11.1□□□□□ -0.63
LDB3-209ENST00000623056 PHLDA1Q8WV24 401 aaPredicted RBP11.1□□□□□ -0.63
LDB3-209ENST00000623056 VGLL1Q99990 258 aa11.1□□□□□ -0.63
LDB3-209ENST00000623056 CHAC1Q9BUX1 264 aa11.1□□□□□ -0.63
LDB3-209ENST00000623056 NDUFB3O43676 98 aa11.09□□□□□ -0.63
LDB3-209ENST00000623056 SCGB1A1P11684 91 aa11.09□□□□□ -0.63
LDB3-209ENST00000623056 SIGMAR1Q99720 223 aa11.09□□□□□ -0.63
LDB3-209ENST00000623056 PPIAL4EA0A075B759 164 aa11.09□□□□□ -0.63
LDB3-209ENST00000623056 MRPS12O15235 138 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms