RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 C8orf86Q6ZUL3 223 aa10.85□□□□□ -0.67
USP39-220ENST00000613444 RPUSD4Q96CM3 377 aaKnown RBP10.85□□□□□ -0.67
USP39-220ENST00000613444 DUX3Q96PT4 197 aa10.85□□□□□ -0.67
USP39-220ENST00000613444 WNK1Q9H4A3 2382 aa10.85□□□□□ -0.67
USP39-220ENST00000613444 PGPA6NDG6 321 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 LINC01619G3V211 115 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 SLURP1P55000 103 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 EXOC3-AS1Q8N2X6 119 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 OR1N2Q8NGR9 330 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 C2CD4CQ8TF44 421 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 SMPXQ9UHP9 88 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 UFC1Q9Y3C8 167 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 TSSC4Q9Y5U2 329 aaPredicted RBP10.84□□□□□ -0.67
USP39-220ENST00000613444 ADARB2-AS1A8MUL3 147 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 CHEK1O14757 476 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 C1QL4Q86Z23 238 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 LYPD1Q8N2G4 141 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 SVBPQ8N300 66 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 RHPN1-AS1Q9BWJ2 59 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 OTORQ9NRC9 128 aa10.84□□□□□ -0.67
USP39-220ENST00000613444 TENM1Q9UKZ4 2725 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 TRBV20OR9-2A0A075B6H5 130 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 ZNF727A8MUV8 499 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 GALR1P47211 349 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 FHL3Q13643 280 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 RAX2Q96IS3 184 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 SMIM7Q9BQ49 75 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 A0A1W2PS18 150 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 ZNF253O75346 499 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 ATF4P18848 351 aaPredicted RBP10.83□□□□□ -0.68
USP39-220ENST00000613444 GNG5P63218 68 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 ZNF674Q2M3X9 581 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 FAM74A3Q4VXF1 159 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.83□□□□□ -0.68
USP39-220ENST00000613444 TCEAL7Q9BRU2 100 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 EPDR1Q9UM22 224 aa10.83□□□□□ -0.68
USP39-220ENST00000613444 A0A1W2PRX2 142 aa10.82□□□□□ -0.68
USP39-220ENST00000613444 C5orf17Q8NAS9 161 aa10.82□□□□□ -0.68
USP39-220ENST00000613444 NIPSNAP3BQ9BS92 247 aa10.82□□□□□ -0.68
USP39-220ENST00000613444 ZNF331Q9NQX6 463 aaPredicted RBP10.82□□□□□ -0.68
USP39-220ENST00000613444 PEX7O00628 323 aa10.82□□□□□ -0.68
USP39-220ENST00000613444 SLC25A5P05141 298 aaKnown RBP10.82□□□□□ -0.68
USP39-220ENST00000613444 ADAMTSL5Q6ZMM2 481 aa10.82□□□□□ -0.68
USP39-220ENST00000613444 CLRN3Q8NCR9 226 aa10.82□□□□□ -0.68
USP39-220ENST00000613444 DPF1Q92782 380 aa10.82□□□□□ -0.68
USP39-220ENST00000613444 SDF2L1Q9HCN8 221 aa10.82□□□□□ -0.68
USP39-220ENST00000613444 A0A1B0GUS0 222 aa10.81□□□□□ -0.68
USP39-220ENST00000613444 C2orf70A6NJV1 201 aa10.81□□□□□ -0.68
USP39-220ENST00000613444 ZNF785A8K8V0 405 aa10.81□□□□□ -0.68
USP39-220ENST00000613444 SCO1O75880 301 aa10.81□□□□□ -0.68
USP39-220ENST00000613444 RPL35P42766 123 aaKnown RBP10.81□□□□□ -0.68
USP39-220ENST00000613444 DLX4Q92988 240 aaPredicted RBP10.81□□□□□ -0.68
USP39-220ENST00000613444 HIST1H2BAQ96A08 127 aa10.81□□□□□ -0.68
USP39-220ENST00000613444 GRAMD2BQ96HH9 432 aa10.81□□□□□ -0.68
USP39-220ENST00000613444 LINC00479Q96M42 142 aa10.81□□□□□ -0.68
USP39-220ENST00000613444 M0R3E3 92 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 TCRAP04437 139 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 PSG9Q00887 426 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 NAT8Q9UHE5 227 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 TRAV8-2A0A0B4J237 113 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 CCL24O00175 119 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 SNAPINO95295 136 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 CBLN1P23435 193 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 HLA-DMBP28068 263 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 TMEM241Q24JQ0 296 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 AWAT1Q58HT5 328 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 IGFL4Q6B9Z1 124 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 TVP23CQ96ET8 276 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 ATG101Q9BSB4 218 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 KLF12Q9Y4X4 402 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 ATRQ13535 2644 aa10.8□□□□□ -0.68
USP39-220ENST00000613444 HELTA6NFD8 242 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 SOCS3O14543 225 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 MEOX2P50222 304 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 SELENOKQ9Y6D0 94 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 PGPEP1LA6NFU8 196 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 C9JCJ5 164 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 FOLR2P14207 255 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 RPL23P62829 140 aaKnown RBP10.79□□□□□ -0.68
USP39-220ENST00000613444 OR9G4Q8NGQ1 327 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 IGF2BP2-AS1Q96M15 143 aa10.79□□□□□ -0.68
USP39-220ENST00000613444 ISLRO14498 428 aa10.78□□□□□ -0.68
USP39-220ENST00000613444 SLC50A1Q9BRV3 221 aa10.78□□□□□ -0.68
USP39-220ENST00000613444 AAMDCQ9H7C9 122 aa10.78□□□□□ -0.68
USP39-220ENST00000613444 TRAV34A0A0B4J273 112 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 DIRC3C9JPN6 131 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 M0R036 132 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 IGLV2-11P01706 119 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 PRB4P10163 310 aaPredicted RBP10.77□□□□□ -0.68
USP39-220ENST00000613444 AKR1C3P42330 323 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 PNRC1Q12796 327 aaPredicted RBP10.77□□□□□ -0.68
USP39-220ENST00000613444 FOXL1Q12952 345 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 TMEM183BQ1AE95 376 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 TCF24Q7RTU0 167 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 LINC01551Q86U37 167 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 CMTM2Q8TAZ6 248 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 MLXQ9UH92 298 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 RPH3ALQ9UNE2 315 aa10.77□□□□□ -0.68
USP39-220ENST00000613444 C7orf77A4D0Y5 90 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms