RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 C7orf66A4D0T2 115 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 BOLA2-SMG1P6H3BVE0 249 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 GOSR2O14653 212 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 AGPAT2O15120 278 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 MRPS12O15235 138 aaKnown RBP5.37□□□□□ -1.55
CUX1-219ENST00000606749 TSC22D2O75157 780 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 SCGB1D2O95969 90 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 MBPP02686 304 aaPredicted RBP5.37□□□□□ -1.55
CUX1-219ENST00000606749 PRB4P10163 310 aaPredicted RBP5.37□□□□□ -1.55
CUX1-219ENST00000606749 RHOBP62745 196 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 HIST1H1AQ02539 215 aaPredicted RBP5.37□□□□□ -1.55
CUX1-219ENST00000606749 SLC38A11Q08AI6 406 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 PXDC1Q5TGL8 231 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 TMEM256Q8N2U0 113 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 C15orf53Q8NAA6 179 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 ZBTB8BQ8NAP8 495 aaPredicted RBP5.37□□□□□ -1.55
CUX1-219ENST00000606749 LRRC20Q8TCA0 184 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 MITD1Q8WV92 249 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 GGACTQ9BVM4 153 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 ARV1Q9H2C2 271 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 PPP1R14DQ9NXH3 145 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 MGAT4CQ9UBM8 478 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 RNF24Q9Y225 148 aa5.37□□□□□ -1.55
CUX1-219ENST00000606749 RCL1Q9Y2P8 373 aaKnown RBP5.37□□□□□ -1.55
CUX1-219ENST00000606749 CBY3A6NI87 242 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 PLA2G10O15496 165 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 SNRPCP09234 159 aaKnown RBP5.36□□□□□ -1.55
CUX1-219ENST00000606749 DEFB130BP0DP73 79 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 DEFB130AP0DP74 79 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 MED14OSP0DP75 135 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 IL7P13232 177 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 HTN1P15515 57 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 TAS2R60P59551 318 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 CNPY1Q3B7I2 92 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 LINC00305Q7Z4B0 112 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 ZNF546Q86UE3 836 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 TMEM37Q8WXS4 190 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 RPUSD4Q96CM3 377 aaKnown RBP5.36□□□□□ -1.55
CUX1-219ENST00000606749 MGST2Q99735 147 aa5.36□□□□□ -1.55
CUX1-219ENST00000606749 ZNF331Q9NQX6 463 aaPredicted RBP5.36□□□□□ -1.55
CUX1-219ENST00000606749 F5H768 121 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 CXCL2P19875 107 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 CDKN1BP46527 198 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 FAM3BP58499 235 aaPredicted RBP5.35□□□□□ -1.55
CUX1-219ENST00000606749 C1orf134Q5TEV5 83 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 MORN5Q5VZ52 161 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 BPIFA4PQ86YQ2 179 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 C16orf74Q96GX8 76 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 SLC50A1Q9BRV3 221 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 DNAJC4Q9NNZ3 241 aa5.35□□□□□ -1.55
CUX1-219ENST00000606749 TIMM8BQ9Y5J9 83 aaPredicted RBP5.35□□□□□ -1.55
CUX1-219ENST00000606749 FAM25EA8MYX2 175 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 PRAC2D3DTV9 90 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 H3BQ15 152 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 H3BTX0 84 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 L7N2F9 121 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 CCSO14618 274 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 LYRM1O43325 122 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 COX7A2P2O60397 106 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 NUDT3O95989 172 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 TCRBP04435 133 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 ATP5G1P05496 136 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 IGLC2P0DOY2 106 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 ATP5G3P48201 142 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 VAMP2P63027 116 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 ZNF846Q147U1 533 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 KIR3DS1Q14943 382 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 OPCMLQ14982 345 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 SOHLH1Q5JUK2 328 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 C10orf113Q5VZT2 155 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 LCN15Q6UWW0 184 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 ZNF493Q6ZR52 646 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 Q6ZRG5 221 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 NRARPQ7Z6K4 114 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 RNASE8Q8TDE3 154 aaKnown RBP5.34□□□□□ -1.55
CUX1-219ENST00000606749 SAT2Q96F10 170 aaPredicted RBP5.34□□□□□ -1.55
CUX1-219ENST00000606749 ATG101Q9BSB4 218 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 C20orf85Q9H1P6 137 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 C11orf1Q9H5F2 150 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 NOP10Q9NPE3 64 aaKnown RBP5.34□□□□□ -1.55
CUX1-219ENST00000606749 NACAE9PAV3 2078 aa5.34□□□□□ -1.55
CUX1-219ENST00000606749 TRAV6A0A075B6T7 132 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 TRAV5A0A0B4J249 113 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 C5orf51A6NDU8 294 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 FAM24AA6NFZ4 105 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 H7BYZ3 331 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 SLC17A3O00476 420 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 CST7O76096 145 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 CT45A10P0DMU9 189 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 CAMLGP49069 296 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 BCAP31P51572 246 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 RAB31Q13636 194 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 MIC13Q5XKP0 118 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 OR10J6PQ8NGY7 276 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 ZNRF2Q8NHG8 242 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 ZNF431Q8TF32 576 aaPredicted RBP5.33□□□□□ -1.56
CUX1-219ENST00000606749 TMEM263Q8WUH6 116 aaKnown RBP5.33□□□□□ -1.56
CUX1-219ENST00000606749 C2orf50Q96LR7 162 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 C20orf144Q9BQM9 153 aa5.33□□□□□ -1.56
CUX1-219ENST00000606749 SEC22CQ9BRL7 303 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms