RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 LCN15Q6UWW0 184 aa12.28□□□□□ -0.44
TRIM28-215ENST00000601150 ZNF738Q8NE65 137 aa12.28□□□□□ -0.44
TRIM28-215ENST00000601150 OR4B1Q8NGF8 309 aa12.28□□□□□ -0.44
TRIM28-215ENST00000601150 IGLC2P0DOY2 106 aa12.27□□□□□ -0.45
TRIM28-215ENST00000601150 CSNK1G2-AS1Q8NCQ2 148 aa12.27□□□□□ -0.45
TRIM28-215ENST00000601150 SCGB1C1Q8TD33 95 aa12.27□□□□□ -0.45
TRIM28-215ENST00000601150 SLC50A1Q9BRV3 221 aa12.27□□□□□ -0.45
TRIM28-215ENST00000601150 CLEC5AQ9NY25 188 aa12.27□□□□□ -0.45
TRIM28-215ENST00000601150 XCL2Q9UBD3 114 aa12.27□□□□□ -0.45
TRIM28-215ENST00000601150 DUSP14O95147 198 aaKnown RBP12.26□□□□□ -0.45
TRIM28-215ENST00000601150 PSG9Q00887 426 aa12.26□□□□□ -0.45
TRIM28-215ENST00000601150 PSG3Q16557 428 aa12.26□□□□□ -0.45
TRIM28-215ENST00000601150 GUK1Q16774 197 aa12.26□□□□□ -0.45
TRIM28-215ENST00000601150 GCSAMLQ5JQS6 135 aa12.26□□□□□ -0.45
TRIM28-215ENST00000601150 HRH4Q9H3N8 390 aa12.26□□□□□ -0.45
TRIM28-215ENST00000601150 ZNF331Q9NQX6 463 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-215ENST00000601150 A8MTW9 85 aa12.25□□□□□ -0.45
TRIM28-215ENST00000601150 H3BQ15 152 aa12.25□□□□□ -0.45
TRIM28-215ENST00000601150 SNRPCP09234 159 aaKnown RBP12.25□□□□□ -0.45
TRIM28-215ENST00000601150 HLA-DMBP28068 263 aa12.25□□□□□ -0.45
TRIM28-215ENST00000601150 PARD6GQ9BYG4 376 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-215ENST00000601150 C11orf68Q9H3H3 251 aaKnown RBP12.25□□□□□ -0.45
TRIM28-215ENST00000601150 WFDC1Q9HC57 220 aa12.25□□□□□ -0.45
TRIM28-215ENST00000601150 TMEM14CQ9P0S9 112 aa12.25□□□□□ -0.45
TRIM28-215ENST00000601150 DNAH7Q8WXX0 4024 aa12.25□□□□□ -0.45
TRIM28-215ENST00000601150 ZNF705EA8MWA4 302 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-215ENST00000601150 H3BTX0 84 aa12.24□□□□□ -0.45
TRIM28-215ENST00000601150 FXYD7P58549 80 aa12.24□□□□□ -0.45
TRIM28-215ENST00000601150 Q5BKY6 102 aa12.24□□□□□ -0.45
TRIM28-215ENST00000601150 SAT2Q96F10 170 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-215ENST00000601150 AQP10Q96PS8 301 aa12.24□□□□□ -0.45
TRIM28-215ENST00000601150 SLC35B3Q9H1N7 401 aa12.24□□□□□ -0.45
TRIM28-215ENST00000601150 SLC17A3O00476 420 aa12.23□□□□□ -0.45
TRIM28-215ENST00000601150 ZNF705DP0CH99 300 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-215ENST00000601150 ZNF705BP0CI00 300 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-215ENST00000601150 MIFP14174 115 aa12.23□□□□□ -0.45
TRIM28-215ENST00000601150 CNN1P51911 297 aaKnown RBP12.23□□□□□ -0.45
TRIM28-215ENST00000601150 FFAR4Q5NUL3 377 aa12.23□□□□□ -0.45
TRIM28-215ENST00000601150 RPUSD4Q96CM3 377 aaKnown RBP12.23□□□□□ -0.45
TRIM28-215ENST00000601150 MRPL32Q9BYC8 188 aaKnown RBP12.23□□□□□ -0.45
TRIM28-215ENST00000601150 MFFQ9GZY8 342 aa12.23□□□□□ -0.45
TRIM28-215ENST00000601150 ZNF586Q9NXT0 402 aa12.23□□□□□ -0.45
TRIM28-215ENST00000601150 X6R8D5 127 aa12.23□□□□□ -0.45
TRIM28-215ENST00000601150 IGHV4-28A0A0C4DH34 117 aa12.22□□□□□ -0.45
TRIM28-215ENST00000601150 ZNF253O75346 499 aa12.22□□□□□ -0.45
TRIM28-215ENST00000601150 HIST1H1EP10412 219 aaKnown RBP12.22□□□□□ -0.45
TRIM28-215ENST00000601150 AMTNQ6UX39 209 aa12.22□□□□□ -0.45
TRIM28-215ENST00000601150 MIR17HGQ75NE6 70 aa12.22□□□□□ -0.45
TRIM28-215ENST00000601150 Q8NAQ8 132 aa12.22□□□□□ -0.45
TRIM28-215ENST00000601150 OR8A1Q8NGG7 326 aa12.22□□□□□ -0.45
TRIM28-215ENST00000601150 OR2T35Q8NGX2 323 aa12.22□□□□□ -0.45
TRIM28-215ENST00000601150 SLC25A2Q9BXI2 301 aa12.22□□□□□ -0.45
TRIM28-215ENST00000601150 DEFB4AO15263 64 aa12.21□□□□□ -0.45
TRIM28-215ENST00000601150 AMBPP02760 352 aa12.21□□□□□ -0.45
TRIM28-215ENST00000601150 PYYP10082 97 aa12.21□□□□□ -0.45
TRIM28-215ENST00000601150 HIST1H1AQ02539 215 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-215ENST00000601150 ZNF266Q14584 549 aa12.21□□□□□ -0.45
TRIM28-215ENST00000601150 INO80EQ8NBZ0 244 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-215ENST00000601150 FAM167A-AS1Q96KT0 104 aa12.21□□□□□ -0.45
TRIM28-215ENST00000601150 FUT9Q9Y231 359 aa12.21□□□□□ -0.45
TRIM28-215ENST00000601150 TRBV19A0A075B6N1 114 aa12.2□□□□□ -0.46
TRIM28-215ENST00000601150 FXYD6-FXYD2A0A087WZ82 144 aa12.2□□□□□ -0.46
TRIM28-215ENST00000601150 CXorf65A6NEN9 183 aa12.2□□□□□ -0.46
TRIM28-215ENST00000601150 ZNF705AQ6ZN79 300 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-215ENST00000601150 TIMM9Q9Y5J7 89 aa12.2□□□□□ -0.46
TRIM28-215ENST00000601150 ZNF705FA8MVS1 300 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-215ENST00000601150 RBMY1A1P0DJD3 496 aaKnown RBP12.19□□□□□ -0.46
TRIM28-215ENST00000601150 RBMY1CP0DJD4 496 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 RHOBP62745 196 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 PMS2P11Q13670 270 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 PDE6HQ13956 83 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 RBMY1FQ15415 496 aaKnown RBP12.19□□□□□ -0.46
TRIM28-215ENST00000601150 C11orf45Q8TAV5 145 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 NEU1Q99519 415 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 OR51M1Q9H341 326 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 PPP1R14DQ9NXH3 145 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 TNFSF18Q9UNG2 199 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 GOLT1BQ9Y3E0 138 aa12.19□□□□□ -0.46
TRIM28-215ENST00000601150 IGHV3OR16-12A0A075B7B8 117 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 BOLA2-SMG1P6H3BVE0 249 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 SPINK13Q1W4C9 94 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 ACOT6Q3I5F7 207 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-215ENST00000601150 OR10J6PQ8NGY7 276 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 BLNKQ8WV28 456 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 MRPL53Q96EL3 112 aaKnown RBP12.18□□□□□ -0.46
TRIM28-215ENST00000601150 IGF2BP2-AS1Q96M15 143 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 PAXXQ9BUH6 204 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 RFNGQ9Y644 331 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 TENM2Q9NT68 2774 aa12.18□□□□□ -0.46
TRIM28-215ENST00000601150 RNF222A6NCQ9 220 aa12.17□□□□□ -0.46
TRIM28-215ENST00000601150 SMIM9A6NGZ8 99 aa12.17□□□□□ -0.46
TRIM28-215ENST00000601150 PRAC2D3DTV9 90 aa12.17□□□□□ -0.46
TRIM28-215ENST00000601150 G3V3Q6 166 aa12.17□□□□□ -0.46
TRIM28-215ENST00000601150 M0R2Z0 102 aa12.17□□□□□ -0.46
TRIM28-215ENST00000601150 NDUFB4O95168 129 aa12.17□□□□□ -0.46
TRIM28-215ENST00000601150 NBEAP1P0C6P0 100 aa12.17□□□□□ -0.46
TRIM28-215ENST00000601150 PRB4P10163 310 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-215ENST00000601150 PRELID1Q9Y255 219 aa12.17□□□□□ -0.46
TRIM28-215ENST00000601150 NUPR2A6NF83 97 aa12.16□□□□□ -0.46
TRIM28-215ENST00000601150 OR7C2O60412 319 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms