RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 A0A0J9YX75 114 aa11.78□□□□□ -0.52
LSM4-206ENST00000600289 OXA1LQ15070 435 aa11.78□□□□□ -0.52
LSM4-206ENST00000600289 LCN15Q6UWW0 184 aa11.78□□□□□ -0.52
LSM4-206ENST00000600289 C20orf173Q96LM9 149 aa11.78□□□□□ -0.52
LSM4-206ENST00000600289 ATP5SQ99766 215 aa11.78□□□□□ -0.52
LSM4-206ENST00000600289 WDR61Q9GZS3 305 aaKnown RBP11.78□□□□□ -0.52
LSM4-206ENST00000600289 KCNIP2Q9NS61 270 aa11.78□□□□□ -0.52
LSM4-206ENST00000600289 ZNF705EA8MWA4 302 aaPredicted RBP11.77□□□□□ -0.53
LSM4-206ENST00000600289 IGLC2P0DOY2 106 aa11.77□□□□□ -0.53
LSM4-206ENST00000600289 RPL12P30050 165 aaKnown RBP11.77□□□□□ -0.53
LSM4-206ENST00000600289 FCN2Q15485 313 aa11.77□□□□□ -0.53
LSM4-206ENST00000600289 MORN5Q5VZ52 161 aa11.77□□□□□ -0.53
LSM4-206ENST00000600289 EBLN2Q6P2I7 272 aa11.77□□□□□ -0.53
LSM4-206ENST00000600289 OR11H2Q8NH07 326 aa11.77□□□□□ -0.53
LSM4-206ENST00000600289 DEFB1P60022 68 aa11.76□□□□□ -0.53
LSM4-206ENST00000600289 CLINT1Q14677 625 aa11.76□□□□□ -0.53
LSM4-206ENST00000600289 THAP6Q8TBB0 222 aa11.76□□□□□ -0.53
LSM4-206ENST00000600289 SLC50A1Q9BRV3 221 aa11.76□□□□□ -0.53
LSM4-206ENST00000600289 PARD6GQ9BYG4 376 aaPredicted RBP11.76□□□□□ -0.53
LSM4-206ENST00000600289 GIPP09681 153 aaPredicted RBP11.75□□□□□ -0.53
LSM4-206ENST00000600289 MIFP14174 115 aa11.75□□□□□ -0.53
LSM4-206ENST00000600289 GUK1Q16774 197 aa11.75□□□□□ -0.53
LSM4-206ENST00000600289 ZNF709Q8N972 641 aa11.75□□□□□ -0.53
LSM4-206ENST00000600289 HRH4Q9H3N8 390 aa11.75□□□□□ -0.53
LSM4-206ENST00000600289 ZNF331Q9NQX6 463 aaPredicted RBP11.75□□□□□ -0.53
LSM4-206ENST00000600289 CLEC5AQ9NY25 188 aa11.75□□□□□ -0.53
LSM4-206ENST00000600289 C17orf112F2Z3M2 114 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 F6UB75 175 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 ZNF253O75346 499 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 DUSP14O95147 198 aaKnown RBP11.74□□□□□ -0.53
LSM4-206ENST00000600289 FGL1Q08830 312 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 PSG3Q16557 428 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 FAM78BQ5VT40 261 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 RNF182Q8N6D2 247 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 Q8NAQ8 132 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 TMEM14CQ9P0S9 112 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 X6R8D5 127 aa11.74□□□□□ -0.53
LSM4-206ENST00000600289 PSG9Q00887 426 aa11.73□□□□□ -0.53
LSM4-206ENST00000600289 AMTNQ6UX39 209 aa11.73□□□□□ -0.53
LSM4-206ENST00000600289 LRRC20Q8TCA0 184 aa11.73□□□□□ -0.53
LSM4-206ENST00000600289 SAT2Q96F10 170 aaPredicted RBP11.73□□□□□ -0.53
LSM4-206ENST00000600289 TRAV5A0A0B4J249 113 aa11.72□□□□□ -0.53
LSM4-206ENST00000600289 IGFL4Q6B9Z1 124 aa11.72□□□□□ -0.53
LSM4-206ENST00000600289 ZNF705AQ6ZN79 300 aaPredicted RBP11.72□□□□□ -0.53
LSM4-206ENST00000600289 ZNF738Q8NE65 137 aa11.72□□□□□ -0.53
LSM4-206ENST00000600289 OR4B1Q8NGF8 309 aa11.72□□□□□ -0.53
LSM4-206ENST00000600289 AQP10Q96PS8 301 aa11.72□□□□□ -0.53
LSM4-206ENST00000600289 NEU1Q99519 415 aa11.72□□□□□ -0.53
LSM4-206ENST00000600289 MRPL32Q9BYC8 188 aaKnown RBP11.72□□□□□ -0.53
LSM4-206ENST00000600289 XCL2Q9UBD3 114 aa11.72□□□□□ -0.53
LSM4-206ENST00000600289 H3BQ15 152 aa11.71□□□□□ -0.53
LSM4-206ENST00000600289 IFNA5P01569 189 aa11.71□□□□□ -0.53
LSM4-206ENST00000600289 IGKV3-20P01619 116 aa11.71□□□□□ -0.53
LSM4-206ENST00000600289 AMBPP02760 352 aa11.71□□□□□ -0.53
LSM4-206ENST00000600289 CNN1P51911 297 aaKnown RBP11.71□□□□□ -0.53
LSM4-206ENST00000600289 GCSAMLQ5JQS6 135 aa11.71□□□□□ -0.53
LSM4-206ENST00000600289 SLC35B3Q9H1N7 401 aa11.71□□□□□ -0.53
LSM4-206ENST00000600289 ZNF705FA8MVS1 300 aaPredicted RBP11.7□□□□□ -0.54
LSM4-206ENST00000600289 SLC17A3O00476 420 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 ZNF705DP0CH99 300 aaPredicted RBP11.7□□□□□ -0.54
LSM4-206ENST00000600289 ZNF705BP0CI00 300 aaPredicted RBP11.7□□□□□ -0.54
LSM4-206ENST00000600289 HLA-DMBP28068 263 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 PDE6HQ13956 83 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 OR8A1Q8NGG7 326 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 SCGB1C1Q8TD33 95 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 FAM167A-AS1Q96KT0 104 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 SMIM3Q9BZL3 60 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 WFDC1Q9HC57 220 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 ZNF586Q9NXT0 402 aa11.7□□□□□ -0.54
LSM4-206ENST00000600289 TRBV19A0A075B6N1 114 aa11.69□□□□□ -0.54
LSM4-206ENST00000600289 IGHV4-28A0A0C4DH34 117 aa11.69□□□□□ -0.54
LSM4-206ENST00000600289 SMIM9A6NGZ8 99 aa11.69□□□□□ -0.54
LSM4-206ENST00000600289 HIST1H1EP10412 219 aaKnown RBP11.69□□□□□ -0.54
LSM4-206ENST00000600289 RPUSD4Q96CM3 377 aaKnown RBP11.69□□□□□ -0.54
LSM4-206ENST00000600289 MRPL53Q96EL3 112 aaKnown RBP11.69□□□□□ -0.54
LSM4-206ENST00000600289 SLC25A2Q9BXI2 301 aa11.69□□□□□ -0.54
LSM4-206ENST00000600289 MFFQ9GZY8 342 aa11.69□□□□□ -0.54
LSM4-206ENST00000600289 FUT9Q9Y231 359 aa11.69□□□□□ -0.54
LSM4-206ENST00000600289 TIMM9Q9Y5J7 89 aa11.69□□□□□ -0.54
LSM4-206ENST00000600289 NUPR2A6NF83 97 aa11.68□□□□□ -0.54
LSM4-206ENST00000600289 JTBO76095 146 aa11.68□□□□□ -0.54
LSM4-206ENST00000600289 RBMY1A1P0DJD3 496 aaKnown RBP11.68□□□□□ -0.54
LSM4-206ENST00000600289 RBMY1CP0DJD4 496 aa11.68□□□□□ -0.54
LSM4-206ENST00000600289 ZNF266Q14584 549 aa11.68□□□□□ -0.54
LSM4-206ENST00000600289 RBMY1FQ15415 496 aaKnown RBP11.68□□□□□ -0.54
LSM4-206ENST00000600289 MIR17HGQ75NE6 70 aa11.68□□□□□ -0.54
LSM4-206ENST00000600289 IGF2BP2-AS1Q96M15 143 aa11.68□□□□□ -0.54
LSM4-206ENST00000600289 ABCA13Q86UQ4 5058 aa11.68□□□□□ -0.54
LSM4-206ENST00000600289 BOLA2-SMG1P6H3BVE0 249 aa11.67□□□□□ -0.54
LSM4-206ENST00000600289 FXYD7P58549 80 aa11.67□□□□□ -0.54
LSM4-206ENST00000600289 Q5BKY6 102 aa11.67□□□□□ -0.54
LSM4-206ENST00000600289 FFAR4Q5NUL3 377 aa11.67□□□□□ -0.54
LSM4-206ENST00000600289 C11orf45Q8TAV5 145 aa11.67□□□□□ -0.54
LSM4-206ENST00000600289 GOLT1BQ9Y3E0 138 aa11.67□□□□□ -0.54
LSM4-206ENST00000600289 DNAH10Q8IVF4 4471 aa11.67□□□□□ -0.54
LSM4-206ENST00000600289 G3V3Q6 166 aa11.66□□□□□ -0.54
LSM4-206ENST00000600289 H3BTX0 84 aa11.66□□□□□ -0.54
LSM4-206ENST00000600289 CRXO43186 299 aaPredicted RBP11.66□□□□□ -0.54
LSM4-206ENST00000600289 NDUFB4O95168 129 aa11.66□□□□□ -0.54
LSM4-206ENST00000600289 SNRPCP09234 159 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms