RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 LINC00052Q96N35 136 aa13.5□□□□□ -0.25
PNKP-213ENST00000599543 SHANK2-AS3Q9BTD1 123 aa13.5□□□□□ -0.25
PNKP-213ENST00000599543 ARV1Q9H2C2 271 aa13.5□□□□□ -0.25
PNKP-213ENST00000599543 WFDC1Q9HC57 220 aa13.5□□□□□ -0.25
PNKP-213ENST00000599543 DEFB1P60022 68 aa13.49□□□□□ -0.25
PNKP-213ENST00000599543 PLP1P60201 277 aa13.49□□□□□ -0.25
PNKP-213ENST00000599543 C1orf194Q5T5A4 169 aa13.49□□□□□ -0.25
PNKP-213ENST00000599543 TMEM37Q8WXS4 190 aa13.49□□□□□ -0.25
PNKP-213ENST00000599543 RSG1Q9BU20 258 aa13.49□□□□□ -0.25
PNKP-213ENST00000599543 RFNGQ9Y644 331 aa13.49□□□□□ -0.25
PNKP-213ENST00000599543 PXMP4Q9Y6I8 212 aa13.49□□□□□ -0.25
PNKP-213ENST00000599543 FXYD6-FXYD2A0A087WZ82 144 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 IGKV3-20P01619 116 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 PSMB3P49720 205 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 GCSAMLQ5JQS6 135 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 GDF5OSQ5U4N7 250 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 FOXI2Q6ZQN5 318 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 ZNF767PQ75MW2 155 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 OR2T35Q8NGX2 323 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 C17orf77Q96MU5 243 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 ATP5SQ99766 215 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 NPCDR1Q9BY65 106 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 SAV1Q9H4B6 383 aaPredicted RBP13.48□□□□□ -0.25
PNKP-213ENST00000599543 SLC39A9Q9NUM3 307 aa13.48□□□□□ -0.25
PNKP-213ENST00000599543 DEFB131BA0A096LNP1 70 aa13.47□□□□□ -0.25
PNKP-213ENST00000599543 TRAV5A0A0B4J249 113 aa13.47□□□□□ -0.25
PNKP-213ENST00000599543 PRB4P10163 310 aaPredicted RBP13.47□□□□□ -0.25
PNKP-213ENST00000599543 B2MP61769 119 aa13.47□□□□□ -0.25
PNKP-213ENST00000599543 FGL1Q08830 312 aa13.47□□□□□ -0.25
PNKP-213ENST00000599543 C12orf74Q32Q52 190 aa13.47□□□□□ -0.25
PNKP-213ENST00000599543 IGFL4Q6B9Z1 124 aa13.47□□□□□ -0.25
PNKP-213ENST00000599543 LINC00305Q7Z4B0 112 aa13.47□□□□□ -0.25
PNKP-213ENST00000599543 WDR61Q9GZS3 305 aaKnown RBP13.47□□□□□ -0.25
PNKP-213ENST00000599543 G3V3Q6 166 aa13.46□□□□□ -0.25
PNKP-213ENST00000599543 AMBPP02760 352 aa13.46□□□□□ -0.25
PNKP-213ENST00000599543 GALR1P47211 349 aa13.46□□□□□ -0.25
PNKP-213ENST00000599543 RPL29P47914 159 aaKnown RBP13.46□□□□□ -0.25
PNKP-213ENST00000599543 SAMD13Q5VXD3 122 aa13.46□□□□□ -0.25
PNKP-213ENST00000599543 C10orf113Q5VZT2 155 aa13.46□□□□□ -0.25
PNKP-213ENST00000599543 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.46□□□□□ -0.25
PNKP-213ENST00000599543 ZNF705AQ6ZN79 300 aaPredicted RBP13.46□□□□□ -0.25
PNKP-213ENST00000599543 OR4B1Q8NGF8 309 aa13.46□□□□□ -0.25
PNKP-213ENST00000599543 IGHV3OR16-12A0A075B7B8 117 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 TMEM189A5PLL7 270 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 H3BTX0 84 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 ISLRO14498 428 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 SOCS3O14543 225 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 FXYD7P58549 80 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 SPATA31B1PQ5VZV4 182 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 Q6ZRG5 221 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 NEU1Q99519 415 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 DNAJC4Q9NNZ3 241 aa13.45□□□□□ -0.26
PNKP-213ENST00000599543 SMIM9A6NGZ8 99 aa13.44□□□□□ -0.26
PNKP-213ENST00000599543 ZNF705FA8MVS1 300 aaPredicted RBP13.44□□□□□ -0.26
PNKP-213ENST00000599543 ZNF705DP0CH99 300 aaPredicted RBP13.44□□□□□ -0.26
PNKP-213ENST00000599543 ZNF705BP0CI00 300 aaPredicted RBP13.44□□□□□ -0.26
PNKP-213ENST00000599543 EMP1P54849 157 aa13.44□□□□□ -0.26
PNKP-213ENST00000599543 PXDC1Q5TGL8 231 aa13.44□□□□□ -0.26
PNKP-213ENST00000599543 EBLN2Q6P2I7 272 aa13.44□□□□□ -0.26
PNKP-213ENST00000599543 ZNF709Q8N972 641 aa13.44□□□□□ -0.26
PNKP-213ENST00000599543 C20orf173Q96LM9 149 aa13.44□□□□□ -0.26
PNKP-213ENST00000599543 NDUFAF3Q9BU61 184 aa13.44□□□□□ -0.26
PNKP-213ENST00000599543 MPDU1O75352 247 aa13.43□□□□□ -0.26
PNKP-213ENST00000599543 IFNA5P01569 189 aa13.43□□□□□ -0.26
PNKP-213ENST00000599543 SPART-AS1P0CW21 52 aa13.43□□□□□ -0.26
PNKP-213ENST00000599543 MEOX2P50222 304 aa13.43□□□□□ -0.26
PNKP-213ENST00000599543 RNF182Q8N6D2 247 aa13.43□□□□□ -0.26
PNKP-213ENST00000599543 OR1L4Q8NGR5 311 aa13.43□□□□□ -0.26
PNKP-213ENST00000599543 C16orf92Q96LL3 132 aa13.43□□□□□ -0.26
PNKP-213ENST00000599543 CLUHP3Q96NS8 147 aa13.43□□□□□ -0.26
PNKP-213ENST00000599543 hCG_2014768A0A024R1R8 64 aa13.42□□□□□ -0.26
PNKP-213ENST00000599543 RNF222A6NCQ9 220 aa13.42□□□□□ -0.26
PNKP-213ENST00000599543 F6UB75 175 aa13.42□□□□□ -0.26
PNKP-213ENST00000599543 EIF3GO75821 320 aaKnown RBP eCLIP13.42□□□□□ -0.26
PNKP-213ENST00000599543 RPL7P18124 248 aaKnown RBP13.42□□□□□ -0.26
PNKP-213ENST00000599543 SCGB1C1Q8TD33 95 aa13.42□□□□□ -0.26
PNKP-213ENST00000599543 AQP10Q96PS8 301 aa13.42□□□□□ -0.26
PNKP-213ENST00000599543 SLC35B3Q9H1N7 401 aa13.42□□□□□ -0.26
PNKP-213ENST00000599543 RPRMQ9NS64 109 aa13.42□□□□□ -0.26
PNKP-213ENST00000599543 TEX48A0A1B0GUV7 120 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 MRPS12O15235 138 aaKnown RBP13.41□□□□□ -0.26
PNKP-213ENST00000599543 P0DMU3 169 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 FAM231AP0DMU4 169 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 FAM231CP0DMU5 169 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 S100A7P31151 101 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 PSG9Q00887 426 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 FAM78BQ5VT40 261 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 ASB13Q8WXK3 278 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 TNFSF18Q9UNG2 199 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 GOLT1BQ9Y3E0 138 aa13.41□□□□□ -0.26
PNKP-213ENST00000599543 TRAV8-2A0A0B4J237 113 aa13.4□□□□□ -0.26
PNKP-213ENST00000599543 A0A0J9YX75 114 aa13.4□□□□□ -0.26
PNKP-213ENST00000599543 FFAR4Q5NUL3 377 aa13.4□□□□□ -0.26
PNKP-213ENST00000599543 MIR17HGQ75NE6 70 aa13.4□□□□□ -0.26
PNKP-213ENST00000599543 INO80EQ8NBZ0 244 aaPredicted RBP13.4□□□□□ -0.26
PNKP-213ENST00000599543 GPR82Q96P67 336 aa13.4□□□□□ -0.26
PNKP-213ENST00000599543 PFDN5Q99471 154 aa13.4□□□□□ -0.26
PNKP-213ENST00000599543 C17orf112F2Z3M2 114 aa13.39□□□□□ -0.27
PNKP-213ENST00000599543 Q6ZNX1 250 aa13.39□□□□□ -0.27
PNKP-213ENST00000599543 S100A7AQ86SG5 101 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms