RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 LCN15Q6UWW0 184 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 RNF182Q8N6D2 247 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 OR5C1Q8NGR4 320 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 HRH4Q9H3N8 390 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 DNAJC4Q9NNZ3 241 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 SLC39A9Q9NUM3 307 aa11.74□□□□□ -0.53
TRIM28-206ENST00000595974 ALMS1Q8TCU4 4167 aa11.73□□□□□ -0.53
TRIM28-206ENST00000595974 DUSP14O95147 198 aaKnown RBP11.73□□□□□ -0.53
TRIM28-206ENST00000595974 RBMY1A1P0DJD3 496 aaKnown RBP11.73□□□□□ -0.53
TRIM28-206ENST00000595974 RBMY1CP0DJD4 496 aa11.73□□□□□ -0.53
TRIM28-206ENST00000595974 CXCL3P19876 107 aa11.73□□□□□ -0.53
TRIM28-206ENST00000595974 RBMY1FQ15415 496 aaKnown RBP11.73□□□□□ -0.53
TRIM28-206ENST00000595974 ZNF705AQ6ZN79 300 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-206ENST00000595974 ZNF738Q8NE65 137 aa11.73□□□□□ -0.53
TRIM28-206ENST00000595974 LRRC20Q8TCA0 184 aa11.73□□□□□ -0.53
TRIM28-206ENST00000595974 PHLDA1Q8WV24 401 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-206ENST00000595974 SLC50A1Q9BRV3 221 aa11.73□□□□□ -0.53
TRIM28-206ENST00000595974 SLC35B3Q9H1N7 401 aa11.73□□□□□ -0.53
TRIM28-206ENST00000595974 KLK5Q9Y337 293 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-206ENST00000595974 PXMP4Q9Y6I8 212 aa11.73□□□□□ -0.53
TRIM28-206ENST00000595974 ZNF705FA8MVS1 300 aaPredicted RBP11.72□□□□□ -0.53
TRIM28-206ENST00000595974 MPC2O95563 127 aa11.72□□□□□ -0.53
TRIM28-206ENST00000595974 ZNF705DP0CH99 300 aaPredicted RBP11.72□□□□□ -0.53
TRIM28-206ENST00000595974 ZNF705BP0CI00 300 aaPredicted RBP11.72□□□□□ -0.53
TRIM28-206ENST00000595974 FXYD7P58549 80 aa11.72□□□□□ -0.53
TRIM28-206ENST00000595974 NANOS2P60321 138 aaKnown RBP11.72□□□□□ -0.53
TRIM28-206ENST00000595974 MORN5Q5VZ52 161 aa11.72□□□□□ -0.53
TRIM28-206ENST00000595974 IGFL4Q6B9Z1 124 aa11.72□□□□□ -0.53
TRIM28-206ENST00000595974 NEU1Q99519 415 aa11.72□□□□□ -0.53
TRIM28-206ENST00000595974 NPCDR1Q9BY65 106 aa11.72□□□□□ -0.53
TRIM28-206ENST00000595974 AMBPP02760 352 aa11.71□□□□□ -0.53
TRIM28-206ENST00000595974 CNN1P51911 297 aaKnown RBP11.71□□□□□ -0.53
TRIM28-206ENST00000595974 PSG3Q16557 428 aa11.71□□□□□ -0.53
TRIM28-206ENST00000595974 AMTNQ6UX39 209 aa11.71□□□□□ -0.53
TRIM28-206ENST00000595974 ZNF331Q9NQX6 463 aaPredicted RBP11.71□□□□□ -0.53
TRIM28-206ENST00000595974 KCNIP2Q9NS61 270 aa11.71□□□□□ -0.53
TRIM28-206ENST00000595974 ALG5Q9Y673 324 aa11.71□□□□□ -0.53
TRIM28-206ENST00000595974 DNAH1Q9P2D7 4330 aa11.7□□□□□ -0.54
TRIM28-206ENST00000595974 SMIM9A6NGZ8 99 aa11.7□□□□□ -0.54
TRIM28-206ENST00000595974 IGLC2P0DOY2 106 aa11.7□□□□□ -0.54
TRIM28-206ENST00000595974 CLINT1Q14677 625 aa11.7□□□□□ -0.54
TRIM28-206ENST00000595974 THAP6Q8TBB0 222 aa11.7□□□□□ -0.54
TRIM28-206ENST00000595974 RNF126Q9BV68 326 aa11.7□□□□□ -0.54
TRIM28-206ENST00000595974 GOLT1BQ9Y3E0 138 aa11.7□□□□□ -0.54
TRIM28-206ENST00000595974 HLA-DMBP28068 263 aa11.69□□□□□ -0.54
TRIM28-206ENST00000595974 GUK1Q16774 197 aa11.69□□□□□ -0.54
TRIM28-206ENST00000595974 OR11H7Q8NGC8 314 aa11.69□□□□□ -0.54
TRIM28-206ENST00000595974 OR8A1Q8NGG7 326 aa11.69□□□□□ -0.54
TRIM28-206ENST00000595974 ATP5SQ99766 215 aa11.69□□□□□ -0.54
TRIM28-206ENST00000595974 WDR61Q9GZS3 305 aaKnown RBP11.69□□□□□ -0.54
TRIM28-206ENST00000595974 HSPB11Q9Y547 144 aa11.69□□□□□ -0.54
TRIM28-206ENST00000595974 TMEM189A5PLL7 270 aa11.68□□□□□ -0.54
TRIM28-206ENST00000595974 C11orf94C9JXX5 98 aa11.68□□□□□ -0.54
TRIM28-206ENST00000595974 HIST1H1AQ02539 215 aaPredicted RBP11.68□□□□□ -0.54
TRIM28-206ENST00000595974 RPUSD4Q96CM3 377 aaKnown RBP11.68□□□□□ -0.54
TRIM28-206ENST00000595974 IGF2BP2-AS1Q96M15 143 aa11.68□□□□□ -0.54
TRIM28-206ENST00000595974 MBD2Q9UBB5 411 aa11.68□□□□□ -0.54
TRIM28-206ENST00000595974 RFNGQ9Y644 331 aa11.68□□□□□ -0.54
TRIM28-206ENST00000595974 IGHV3OR16-12A0A075B7B8 117 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 TRAV5A0A0B4J249 113 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 C17orf112F2Z3M2 114 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 H3BQ15 152 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 BOLA2-SMG1P6H3BVE0 249 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 SLC17A3O00476 420 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 ZNF253O75346 499 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 INSP01308 110 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 RPL12P30050 165 aaKnown RBP11.67□□□□□ -0.54
TRIM28-206ENST00000595974 C1orf158Q8N1D5 194 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 LINC00476Q8WZB0 136 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 SAT2Q96F10 170 aaPredicted RBP11.67□□□□□ -0.54
TRIM28-206ENST00000595974 TMEM14CQ9P0S9 112 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 HYDINQ4G0P3 5121 aa11.67□□□□□ -0.54
TRIM28-206ENST00000595974 H3BTX0 84 aa11.66□□□□□ -0.54
TRIM28-206ENST00000595974 M0R2Z0 102 aa11.66□□□□□ -0.54
TRIM28-206ENST00000595974 SNRPCP09234 159 aaKnown RBP11.66□□□□□ -0.54
TRIM28-206ENST00000595974 SPINK13Q1W4C9 94 aa11.66□□□□□ -0.54
TRIM28-206ENST00000595974 CELA1Q9UNI1 258 aa11.66□□□□□ -0.54
TRIM28-206ENST00000595974 TEX48A0A1B0GUV7 120 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 HBE1P02100 147 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 RHOBP62745 196 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 PDE6HQ13956 83 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 GCSAMLQ5JQS6 135 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 C2CD4CQ8TF44 421 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 TMEM208Q9BTX3 173 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 MRPL32Q9BYC8 188 aaKnown RBP11.65□□□□□ -0.54
TRIM28-206ENST00000595974 MED28Q9H204 178 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 PPP1R14DQ9NXH3 145 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 ZNF586Q9NXT0 402 aa11.65□□□□□ -0.54
TRIM28-206ENST00000595974 TRAV10A0A0B4J240 114 aa11.64□□□□□ -0.55
TRIM28-206ENST00000595974 CRXO43186 299 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-206ENST00000595974 IFNA5P01569 189 aa11.64□□□□□ -0.55
TRIM28-206ENST00000595974 HIST1H1EP10412 219 aaKnown RBP11.64□□□□□ -0.55
TRIM28-206ENST00000595974 TCTAP57738 103 aa11.64□□□□□ -0.55
TRIM28-206ENST00000595974 Q6ZTC4 211 aa11.64□□□□□ -0.55
TRIM28-206ENST00000595974 BAP18Q8IXM2 172 aa11.64□□□□□ -0.55
TRIM28-206ENST00000595974 OR10J6PQ8NGY7 276 aa11.64□□□□□ -0.55
TRIM28-206ENST00000595974 PARD6GQ9BYG4 376 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-206ENST00000595974 TRBV19A0A075B6N1 114 aa11.63□□□□□ -0.55
TRIM28-206ENST00000595974 FCN2Q15485 313 aa11.63□□□□□ -0.55
TRIM28-206ENST00000595974 RRN3P1Q2M238 152 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms