RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 A0A087X0K7 114 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 IGLL5B9A064 214 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 RBMY1A1P0DJD3 496 aaKnown RBP9.06□□□□□ -0.96
UPF1-203ENST00000594504 RBMY1CP0DJD4 496 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 RBMY1FQ15415 496 aaKnown RBP9.06□□□□□ -0.96
UPF1-203ENST00000594504 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 BPIFA4PQ86YQ2 179 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 SCGB1C1Q8TD33 95 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 C2CD4CQ8TF44 421 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 C16orf92Q96LL3 132 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 C17orf77Q96MU5 243 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 MFFQ9GZY8 342 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 APLNQ9ULZ1 77 aa9.06□□□□□ -0.96
UPF1-203ENST00000594504 FXYD6-FXYD2A0A087WZ82 144 aa9.05□□□□□ -0.96
UPF1-203ENST00000594504 MRPS12O15235 138 aaKnown RBP9.05□□□□□ -0.96
UPF1-203ENST00000594504 ACTL10Q5JWF8 245 aa9.05□□□□□ -0.96
UPF1-203ENST00000594504 MORN5Q5VZ52 161 aa9.05□□□□□ -0.96
UPF1-203ENST00000594504 TRPT1Q86TN4 253 aaKnown RBP9.05□□□□□ -0.96
UPF1-203ENST00000594504 Q8NAQ8 132 aa9.05□□□□□ -0.96
UPF1-203ENST00000594504 INO80EQ8NBZ0 244 aaPredicted RBP9.05□□□□□ -0.96
UPF1-203ENST00000594504 LINC00052Q96N35 136 aa9.05□□□□□ -0.96
UPF1-203ENST00000594504 WFDC1Q9HC57 220 aa9.05□□□□□ -0.96
UPF1-203ENST00000594504 CLEC5AQ9NY25 188 aa9.05□□□□□ -0.96
UPF1-203ENST00000594504 IGHV4-28A0A0C4DH34 117 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 SPP1P10451 314 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 HLA-DRB4P13762 266 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 CXCL2P19875 107 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 C4BPBP20851 252 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 ZNF266Q14584 549 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 GCSAMLQ5JQS6 135 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 FOXI2Q6ZQN5 318 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 RPRMQ9NS64 109 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 TNFSF18Q9UNG2 199 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 HLA-DRB4X5D2U9 266 aa9.04□□□□□ -0.96
UPF1-203ENST00000594504 FRAS1Q86XX4 4008 aa9.03□□□□□ -0.96
UPF1-203ENST00000594504 RNF222A6NCQ9 220 aa9.03□□□□□ -0.96
UPF1-203ENST00000594504 G3V3Q6 166 aa9.03□□□□□ -0.96
UPF1-203ENST00000594504 H3BMM0 161 aa9.03□□□□□ -0.96
UPF1-203ENST00000594504 SPATA31B1PQ5VZV4 182 aa9.03□□□□□ -0.96
UPF1-203ENST00000594504 MORN3Q6PF18 240 aaPredicted RBP9.03□□□□□ -0.96
UPF1-203ENST00000594504 LCN15Q6UWW0 184 aa9.03□□□□□ -0.96
UPF1-203ENST00000594504 LRRC20Q8TCA0 184 aa9.03□□□□□ -0.96
UPF1-203ENST00000594504 SAV1Q9H4B6 383 aaPredicted RBP9.03□□□□□ -0.96
UPF1-203ENST00000594504 X6R8D5 127 aa9.03□□□□□ -0.96
UPF1-203ENST00000594504 TRAV8-2A0A0B4J237 113 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 TRAV5A0A0B4J249 113 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 IGLC2P0DOY2 106 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 HLA-DMBP28068 263 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 GUK1Q16774 197 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 TMEM41BQ5BJD5 291 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 FFAR4Q5NUL3 377 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 FAM78BQ5VT40 261 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 Q6ZTC4 211 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 ZNF767PQ75MW2 155 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 C20orf173Q96LM9 149 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 SLC50A1Q9BRV3 221 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 MRPL32Q9BYC8 188 aaKnown RBP9.02□□□□□ -0.97
UPF1-203ENST00000594504 HRH4Q9H3N8 390 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 TMEM14CQ9P0S9 112 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 TIMM9Q9Y5J7 89 aa9.02□□□□□ -0.97
UPF1-203ENST00000594504 NUTF2P61970 127 aaKnown RBP9.01□□□□□ -0.97
UPF1-203ENST00000594504 GDF5OSQ5U4N7 250 aa9.01□□□□□ -0.97
UPF1-203ENST00000594504 EBLN2Q6P2I7 272 aa9.01□□□□□ -0.97
UPF1-203ENST00000594504 CSNK1G2-AS1Q8NCQ2 148 aa9.01□□□□□ -0.97
UPF1-203ENST00000594504 CLUHP3Q96NS8 147 aa9.01□□□□□ -0.97
UPF1-203ENST00000594504 ZNF331Q9NQX6 463 aaPredicted RBP9.01□□□□□ -0.97
UPF1-203ENST00000594504 A0A0J9YX75 114 aa9□□□□□ -0.97
UPF1-203ENST00000594504 ZNF705EA8MWA4 302 aaPredicted RBP9□□□□□ -0.97
UPF1-203ENST00000594504 C11orf94C9JXX5 98 aa9□□□□□ -0.97
UPF1-203ENST00000594504 H3BQ15 152 aa9□□□□□ -0.97
UPF1-203ENST00000594504 SMLR1H3BR10 107 aa9□□□□□ -0.97
UPF1-203ENST00000594504 MIFP14174 115 aa9□□□□□ -0.97
UPF1-203ENST00000594504 DEFB1P60022 68 aa9□□□□□ -0.97
UPF1-203ENST00000594504 PSG3Q16557 428 aa9□□□□□ -0.97
UPF1-203ENST00000594504 IGFL4Q6B9Z1 124 aa9□□□□□ -0.97
UPF1-203ENST00000594504 Q6ZNX1 250 aa9□□□□□ -0.97
UPF1-203ENST00000594504 MIR17HGQ75NE6 70 aa9□□□□□ -0.97
UPF1-203ENST00000594504 RNF182Q8N6D2 247 aa9□□□□□ -0.97
UPF1-203ENST00000594504 HSD17B11Q8NBQ5 300 aa9□□□□□ -0.97
UPF1-203ENST00000594504 ZNF738Q8NE65 137 aa9□□□□□ -0.97
UPF1-203ENST00000594504 SAT2Q96F10 170 aaPredicted RBP9□□□□□ -0.97
UPF1-203ENST00000594504 SLC25A2Q9BXI2 301 aa9□□□□□ -0.97
UPF1-203ENST00000594504 CELA1Q9UNI1 258 aa9□□□□□ -0.97
UPF1-203ENST00000594504 FUT9Q9Y231 359 aa9□□□□□ -0.97
UPF1-203ENST00000594504 TRBV19A0A075B6N1 114 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 IGHV4-4A0A075B6R2 117 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 BORCS7-ASMTA0A0B4J1R7 106 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 F6UB75 175 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 H3BTX0 84 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 SLC17A3O00476 420 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 ARPC5O15511 151 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 ZNF253O75346 499 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 SNRPCP09234 159 aaKnown RBP8.99□□□□□ -0.97
UPF1-203ENST00000594504 HIST1H1EP10412 219 aaKnown RBP8.99□□□□□ -0.97
UPF1-203ENST00000594504 M6PRP20645 277 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 TCTAP57738 103 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 RHOBP62745 196 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 PDE6HQ13956 83 aa8.99□□□□□ -0.97
UPF1-203ENST00000594504 ACOT6Q3I5F7 207 aaPredicted RBP8.99□□□□□ -0.97
UPF1-203ENST00000594504 OR4B1Q8NGF8 309 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms