RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TMEM256Q8N2U0 113 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 OR4B1Q8NGF8 309 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 WDR83OSQ9Y284 106 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 ABCA13Q86UQ4 5058 aa7.59□□□□□ -1.19
LIG3-212ENST00000590181 RBMY1A1P0DJD3 496 aaKnown RBP7.58□□□□□ -1.2
LIG3-212ENST00000590181 RBMY1CP0DJD4 496 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 PRR20EP86478 221 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 PRR20CP86479 221 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 PRR20DP86480 221 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 PRR20BP86481 221 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 PRR20AP86496 221 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 RBMY1FQ15415 496 aaKnown RBP7.58□□□□□ -1.2
LIG3-212ENST00000590181 TMEM182Q6ZP80 229 aaPredicted RBP7.58□□□□□ -1.2
LIG3-212ENST00000590181 TMEM252Q8N6L7 170 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 ZNF709Q8N972 641 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 IGF2BP2-AS1Q96M15 143 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 C20orf144Q9BQM9 153 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 SEC22CQ9BRL7 303 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 RNF126Q9BV68 326 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 C11orf1Q9H5F2 150 aa7.58□□□□□ -1.2
LIG3-212ENST00000590181 FAT2Q9NYQ8 4349 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 INMT-MINDY4F8WBC2 141 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 HBE1P02100 147 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 CXCL3P19876 107 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 HLA-DMBP28068 263 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 TSPOP30536 169 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 NANOS2P60321 138 aaKnown RBP7.57□□□□□ -1.2
LIG3-212ENST00000590181 S100A10P60903 97 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 PSG3Q16557 428 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 PATE2Q6UY27 113 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 NRARPQ7Z6K4 114 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 MGST2Q99735 147 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 SCRT1Q9BWW7 348 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 PPP1R14DQ9NXH3 145 aa7.57□□□□□ -1.2
LIG3-212ENST00000590181 CCSO14618 274 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 CST7O76096 145 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 INSP01308 110 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 FGL1Q08830 312 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 ARL16Q0P5N6 197 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 RAB32Q13637 225 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 PDE6HQ13956 83 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 RRN3P1Q2M238 152 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 GDF5OSQ5U4N7 250 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 ZNF738Q8NE65 137 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 OR8A1Q8NGG7 326 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 TMEM37Q8WXS4 190 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 MRPL53Q96EL3 112 aaKnown RBP7.56□□□□□ -1.2
LIG3-212ENST00000590181 TMEM208Q9BTX3 173 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 ZNF331Q9NQX6 463 aaPredicted RBP7.56□□□□□ -1.2
LIG3-212ENST00000590181 SLC39A9Q9NUM3 307 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 TMEM14CQ9P0S9 112 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 PRELID1Q9Y255 219 aa7.56□□□□□ -1.2
LIG3-212ENST00000590181 TRAV8-2A0A0B4J237 113 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 FAM24AA6NFZ4 105 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 C17orf112F2Z3M2 114 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 MRPS12O15235 138 aaKnown RBP7.55□□□□□ -1.2
LIG3-212ENST00000590181 CCNKO75909 580 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 CNN1P51911 297 aaKnown RBP7.55□□□□□ -1.2
LIG3-212ENST00000590181 OPCMLQ14982 345 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 AMTNQ6UX39 209 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 ZNF493Q6ZR52 646 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 OR10J6PQ8NGY7 276 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 ASB13Q8WXK3 278 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 C17orf77Q96MU5 243 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 UHRF2Q96PU4 802 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 ODF3Q96PU9 254 aa7.55□□□□□ -1.2
LIG3-212ENST00000590181 DNAH2Q9P225 4427 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 DEFB131BA0A096LNP1 70 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 LYRM9A8MSI8 78 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 IGLL5B9A064 214 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 BOLA2-SMG1P6H3BVE0 249 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 DEFB4AO15263 64 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 IGKV3-20P01619 116 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 OR11H7Q8NGC8 314 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 RPUSD4Q96CM3 377 aaKnown RBP7.54□□□□□ -1.2
LIG3-212ENST00000590181 C20orf173Q96LM9 149 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 NIPSNAP3BQ9BS92 247 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 DNAH17Q9UFH2 4485 aa7.54□□□□□ -1.2
LIG3-212ENST00000590181 IGSF23A1L1A6 192 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 SSNA1O43805 119 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 P0DMU3 169 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 FAM231AP0DMU4 169 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 FAM231CP0DMU5 169 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 IGLC2P0DOY2 106 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 HIST1H1EP10412 219 aaKnown RBP7.53□□□□□ -1.2
LIG3-212ENST00000590181 CDKN1BP46527 198 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 TAS2R60P59551 318 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 RHOBP62745 196 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 C12orf74Q32Q52 190 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 C1orf158Q8N1D5 194 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 SAT2Q96F10 170 aaPredicted RBP7.53□□□□□ -1.2
LIG3-212ENST00000590181 NDUFAF3Q9BU61 184 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 NPCDR1Q9BY65 106 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 MRPL32Q9BYC8 188 aaKnown RBP7.53□□□□□ -1.2
LIG3-212ENST00000590181 PARD6GQ9BYG4 376 aaPredicted RBP7.53□□□□□ -1.2
LIG3-212ENST00000590181 SLC35B3Q9H1N7 401 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 DKK2Q9UBU2 259 aa7.53□□□□□ -1.2
LIG3-212ENST00000590181 DYNC1H1Q14204 4646 aaKnown RBP7.52□□□□□ -1.21
LIG3-212ENST00000590181 UBE2L5PA0A1B0GUS4 154 aa7.52□□□□□ -1.21
LIG3-212ENST00000590181 LOC102723971A0A1B0GUV8 181 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms