RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 CYB561D1Q8N8Q1 229 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 STXBP6Q8NFX7 210 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 SEC11CQ9BY50 192 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 ZNF586Q9NXT0 402 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 RABAC1Q9UI14 185 aa7.97□□□□□ -1.13
VPS4B-204ENST00000589604 GGTLC3B5MD39 225 aa7.96□□□□□ -1.13
VPS4B-204ENST00000589604 C11orf94C9JXX5 98 aa7.96□□□□□ -1.13
VPS4B-204ENST00000589604 SNRPCP09234 159 aaKnown RBP7.96□□□□□ -1.13
VPS4B-204ENST00000589604 IGLC2P0DOY2 106 aa7.96□□□□□ -1.13
VPS4B-204ENST00000589604 CDX1P47902 265 aaPredicted RBP7.96□□□□□ -1.13
VPS4B-204ENST00000589604 GUCA2BQ16661 112 aa7.96□□□□□ -1.13
VPS4B-204ENST00000589604 KLHL30-AS1Q8NEE0 82 aa7.96□□□□□ -1.13
VPS4B-204ENST00000589604 SMAD5-AS1Q9Y6J3 95 aa7.96□□□□□ -1.13
VPS4B-204ENST00000589604 MGAM2Q2M2H8 2515 aa7.96□□□□□ -1.14
VPS4B-204ENST00000589604 A0A1W2PRE2 83 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 F8W036 122 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 ZNF207O43670 478 aaKnown RBP7.95□□□□□ -1.14
VPS4B-204ENST00000589604 BUB3O43684 328 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 NDUFB4O95168 129 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 NBEAP1P0C6P0 100 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 HIST1H1EP10412 219 aaKnown RBP7.95□□□□□ -1.14
VPS4B-204ENST00000589604 CST9LP1Q5W188 147 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 GPHB5Q86YW7 130 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 TMEM190Q8WZ59 177 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 TXNDC17Q9BRA2 123 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 IGHV4OR15-8A0A075B7B6 117 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 A0A087WW49 117 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 TMEM250H0YL14 139 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 BPIFA4PQ86YQ2 179 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 Q8N1Y9 231 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 C4orf3Q8WVX3 66 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 OR4F4Q96R69 305 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 ELOVL1Q9BW60 279 aa7.95□□□□□ -1.14
VPS4B-204ENST00000589604 TRBV19A0A075B6N1 114 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 SCO2A0A1W2PP80 73 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 H3BTX0 84 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 SOHLH1Q5JUK2 328 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 ATRAIDQ6UW56 229 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 S100A7AQ86SG5 101 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 BLNKQ8WV28 456 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 C11orf52Q96A22 123 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 METTL26Q96S19 204 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 C20orf24Q9BUV8 137 aa7.94□□□□□ -1.14
VPS4B-204ENST00000589604 IGHV3OR16-13A0A075B7E8 117 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 IGHV3-49A0A0A0MS15 119 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 IGHV3-74A0A0B4J1X5 117 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 K7EMT4 169 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 PDE6DO43924 150 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 APOC3P02656 99 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 EDN2P20800 178 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 C1orf194Q5T5A4 169 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 GLMPQ8WWB7 406 aa7.93□□□□□ -1.14
VPS4B-204ENST00000589604 IGHV3-66A0A0C4DH42 116 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 F6UZH7 168 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 SLC17A3O00476 420 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 RANP62826 216 aaKnown RBP7.92□□□□□ -1.14
VPS4B-204ENST00000589604 FHL3Q13643 280 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 KLF5Q13887 457 aaPredicted RBP7.92□□□□□ -1.14
VPS4B-204ENST00000589604 SIGLEC15Q6ZMC9 328 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 OR8I2Q8N0Y5 310 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 DERL1Q9BUN8 251 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 PARLQ9H300 379 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 A0A087X0K7 114 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 ZNF320A2RRD8 509 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 TMEM213A2RRL7 107 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 PGPA6NDG6 321 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 M0QZ24 198 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 CCL24O00175 119 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 LGALS9O00182 355 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 RPL7P18124 248 aaKnown RBP7.92□□□□□ -1.14
VPS4B-204ENST00000589604 HOXD3P31249 432 aaPredicted RBP7.92□□□□□ -1.14
VPS4B-204ENST00000589604 CEBPGP53567 150 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 SLURP1P55000 103 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 RPEL1Q2QD12 228 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 FAM106AQ4KMX7 169 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 PRR31Q5SQ13 230 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 LINC00482Q8N8I6 264 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 OR11H1Q8NG94 326 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 OR4F17Q8NGA8 305 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 C2CD4CQ8TF44 421 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 NKX6-2Q9C056 277 aaPredicted RBP7.92□□□□□ -1.14
VPS4B-204ENST00000589604 Q9H3A6 140 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 SMPXQ9UHP9 88 aa7.92□□□□□ -1.14
VPS4B-204ENST00000589604 NOTCH1P46531 2555 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 TRBV20OR9-2A0A075B6H5 130 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 IGHV7-4-1A0A0J9YVY3 117 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 A8MWP6 167 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 PDE6HQ13956 83 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 EXOC3-AS1Q8N2X6 119 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 OR1N2Q8NGR9 330 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 RPUSD4Q96CM3 377 aaKnown RBP7.91□□□□□ -1.14
VPS4B-204ENST00000589604 DAZ1Q9NQZ3 744 aaKnown RBP7.91□□□□□ -1.14
VPS4B-204ENST00000589604 OTORQ9NRC9 128 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 RNF24Q9Y225 148 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 X6R8D5 127 aa7.91□□□□□ -1.14
VPS4B-204ENST00000589604 CHEK1O14757 476 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 SCO1O75880 301 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 SCGB1D1O95968 90 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 S100A7P31151 101 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms