RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 SULT1A2P50226 295 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 TAS2R45P59539 299 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 PLP1P60201 277 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 FHL3Q13643 280 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 KLF5Q13887 457 aaPredicted RBP4.04□□□□□ -1.76
LIG3-210ENST00000588109 KHDC3LQ587J8 217 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 LEMD1Q68G75 181 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 PET117Q6UWS5 81 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 LCN15Q6UWW0 184 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 ZNF767PQ75MW2 155 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 MIR17HGQ75NE6 70 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 OR8I2Q8N0Y5 310 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 RPP25LQ8N5L8 163 aaKnown RBP4.04□□□□□ -1.76
LIG3-210ENST00000588109 OR9G4Q8NGQ1 327 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 LRRC20Q8TCA0 184 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 DYNLRB2Q8TF09 96 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 SFT2D1Q8WV19 159 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 DLX4Q92988 240 aaPredicted RBP4.04□□□□□ -1.76
LIG3-210ENST00000588109 ELOVL1Q9BW60 279 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 SCRT1Q9BWW7 348 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 SLC25A39Q9BZJ4 359 aaPredicted RBP4.04□□□□□ -1.76
LIG3-210ENST00000588109 TMEM231Q9H6L2 316 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 TECRQ9NZ01 308 aaKnown RBP4.04□□□□□ -1.76
LIG3-210ENST00000588109 MRPL27Q9P0M9 148 aaKnown RBP4.04□□□□□ -1.76
LIG3-210ENST00000588109 C11orf21Q9P2W6 132 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 FUT9Q9Y231 359 aa4.04□□□□□ -1.76
LIG3-210ENST00000588109 TRAV5A0A0B4J249 113 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 CTXND1A0A1B0GTU2 59 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 TMEM213A2RRL7 107 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 MAP1LC3B2A6NCE7 125 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 C2orf70A6NJV1 201 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 ZNF98A6NK75 572 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 A8MWP6 167 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 SEC14L6B5MCN3 397 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 H3BRN7 92 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 APOHP02749 345 aaPredicted RBP4.03□□□□□ -1.76
LIG3-210ENST00000588109 C8orf88P0DMB2 117 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 FOLR2P14207 255 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 RPL7P18124 248 aaKnown RBP4.03□□□□□ -1.76
LIG3-210ENST00000588109 CBLN1P23435 193 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 CRYBB3P26998 211 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 UBE2L3P68036 154 aaKnown RBP4.03□□□□□ -1.76
LIG3-210ENST00000588109 IFITM2Q01629 132 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 SPATA31B1PQ5VZV4 182 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 PATE2Q6UY27 113 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 STXBP6Q8NFX7 210 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 PCNPQ8WW12 178 aaKnown RBP4.03□□□□□ -1.76
LIG3-210ENST00000588109 MARC2Q969Z3 335 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 ZNF414Q96IQ9 312 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 SPXQ9BT56 116 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 SHANK2-AS3Q9BTD1 123 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 RHPN1-AS1Q9BWJ2 59 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 C1orf43Q9BWL3 253 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 SLC25A2Q9BXI2 301 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 MAP1LC3BQ9GZQ8 125 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 SMPXQ9UHP9 88 aa4.03□□□□□ -1.76
LIG3-210ENST00000588109 ATRQ13535 2644 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 IGKV3-7A0A075B6H7 116 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 A4D1N5 150 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 HELTA6NFD8 242 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 F5H697 171 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 CHEK1O14757 476 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 BUB3O43684 328 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 SAP30O75446 220 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 NUDT3O95989 172 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 CXorf1O96002 111 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 HBE1P02100 147 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 OR10J4P0C629 311 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 STAG3L2P0CL84 134 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 STAG3L3P0CL85 134 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 ARL14EPLP0DKL9 152 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 EDN2P20800 178 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 GALR1P47211 349 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 FGF8P55075 233 aaPredicted RBP4.02□□□□□ -1.77
LIG3-210ENST00000588109 ZNF726P1Q15940 193 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 CD300EQ496F6 205 aaPredicted RBP4.02□□□□□ -1.77
LIG3-210ENST00000588109 C1orf194Q5T5A4 169 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 MORN5Q5VZ52 161 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 SIGLEC15Q6ZMC9 328 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 IL34Q6ZMJ4 242 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 RBPMS2Q6ZRY4 209 aaKnown RBP4.02□□□□□ -1.77
LIG3-210ENST00000588109 SSX7Q7RTT5 188 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 TCF24Q7RTU0 167 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 BPIFA4PQ86YQ2 179 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 SAT2Q96F10 170 aaPredicted RBP4.02□□□□□ -1.77
LIG3-210ENST00000588109 GPR82Q96P67 336 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 PAXXQ9BUH6 204 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 OR51M1Q9H341 326 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 HRH4Q9H3N8 390 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 ZMAT5Q9UDW3 170 aaKnown RBP4.02□□□□□ -1.77
LIG3-210ENST00000588109 SELENOKQ9Y6D0 94 aa4.02□□□□□ -1.77
LIG3-210ENST00000588109 TRAV34A0A0B4J273 112 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 H3BTX0 84 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 TRIAP1O43715 76 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 IFNA1P01562 189 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 CD5P06127 495 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 CSN3P07498 182 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 NMBP08949 121 aa4.01□□□□□ -1.77
LIG3-210ENST00000588109 SNRPCP09234 159 aaKnown RBP4.01□□□□□ -1.77
LIG3-210ENST00000588109 PYYP10082 97 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms