RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 PARD6GQ9BYG4 376 aaPredicted RBP14.06□□□□□ -0.16
SS18-208ENST00000577751 SMIM3Q9BZL3 60 aa14.06□□□□□ -0.16
SS18-208ENST00000577751 HRH4Q9H3N8 390 aa14.06□□□□□ -0.16
SS18-208ENST00000577751 WFDC1Q9HC57 220 aa14.06□□□□□ -0.16
SS18-208ENST00000577751 ZNF331Q9NQX6 463 aaPredicted RBP14.06□□□□□ -0.16
SS18-208ENST00000577751 KCNIP2Q9NS61 270 aa14.06□□□□□ -0.16
SS18-208ENST00000577751 ZNF705EA8MWA4 302 aaPredicted RBP14.05□□□□□ -0.16
SS18-208ENST00000577751 C17orf112F2Z3M2 114 aa14.05□□□□□ -0.16
SS18-208ENST00000577751 OR4B1Q8NGF8 309 aa14.05□□□□□ -0.16
SS18-208ENST00000577751 SAT2Q96F10 170 aaPredicted RBP14.05□□□□□ -0.16
SS18-208ENST00000577751 H3BQ15 152 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 IFNA5P01569 189 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 IGKV3-20P01619 116 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 HLA-DMBP28068 263 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 PSG3Q16557 428 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 LRRC20Q8TCA0 184 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 AQP10Q96PS8 301 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 SLC50A1Q9BRV3 221 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 CLEC5AQ9NY25 188 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 TMEM14CQ9P0S9 112 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 CSMD3Q7Z407 3707 aa14.04□□□□□ -0.16
SS18-208ENST00000577751 SNRPCP09234 159 aaKnown RBP14.03□□□□□ -0.16
SS18-208ENST00000577751 PSG9Q00887 426 aa14.03□□□□□ -0.16
SS18-208ENST00000577751 GUK1Q16774 197 aa14.03□□□□□ -0.16
SS18-208ENST00000577751 ZFAND6Q6FIF0 208 aa14.03□□□□□ -0.16
SS18-208ENST00000577751 AMTNQ6UX39 209 aa14.03□□□□□ -0.16
SS18-208ENST00000577751 SCGB1C1Q8TD33 95 aa14.03□□□□□ -0.16
SS18-208ENST00000577751 XCL2Q9UBD3 114 aa14.03□□□□□ -0.16
SS18-208ENST00000577751 SLC17A3O00476 420 aa14.02□□□□□ -0.17
SS18-208ENST00000577751 DUSP14O95147 198 aaKnown RBP14.02□□□□□ -0.17
SS18-208ENST00000577751 ZNF738Q8NE65 137 aa14.02□□□□□ -0.17
SS18-208ENST00000577751 SLC35B3Q9H1N7 401 aa14.02□□□□□ -0.17
SS18-208ENST00000577751 C11orf68Q9H3H3 251 aaKnown RBP14.02□□□□□ -0.17
SS18-208ENST00000577751 ZNF586Q9NXT0 402 aa14.02□□□□□ -0.17
SS18-208ENST00000577751 X6R8D5 127 aa14.02□□□□□ -0.17
SS18-208ENST00000577751 H3BTX0 84 aa14.01□□□□□ -0.17
SS18-208ENST00000577751 CNN1P51911 297 aaKnown RBP14.01□□□□□ -0.17
SS18-208ENST00000577751 Q8NAQ8 132 aa14.01□□□□□ -0.17
SS18-208ENST00000577751 OR8A1Q8NGG7 326 aa14.01□□□□□ -0.17
SS18-208ENST00000577751 FAM167A-AS1Q96KT0 104 aa14.01□□□□□ -0.17
SS18-208ENST00000577751 SLC25A2Q9BXI2 301 aa14.01□□□□□ -0.17
SS18-208ENST00000577751 MRPL32Q9BYC8 188 aaKnown RBP14.01□□□□□ -0.17
SS18-208ENST00000577751 G3V3Q6 166 aa14□□□□□ -0.17
SS18-208ENST00000577751 ZNF253O75346 499 aa14□□□□□ -0.17
SS18-208ENST00000577751 ZNF705DP0CH99 300 aaPredicted RBP14□□□□□ -0.17
SS18-208ENST00000577751 ZNF705BP0CI00 300 aaPredicted RBP14□□□□□ -0.17
SS18-208ENST00000577751 HIST1H1EP10412 219 aaKnown RBP14□□□□□ -0.17
SS18-208ENST00000577751 MIFP14174 115 aa14□□□□□ -0.17
SS18-208ENST00000577751 FXYD7P58549 80 aa14□□□□□ -0.17
SS18-208ENST00000577751 MIR17HGQ75NE6 70 aa14□□□□□ -0.17
SS18-208ENST00000577751 OR2T35Q8NGX2 323 aa14□□□□□ -0.17
SS18-208ENST00000577751 TRBV19A0A075B6N1 114 aa13.99□□□□□ -0.17
SS18-208ENST00000577751 PYYP10082 97 aa13.99□□□□□ -0.17
SS18-208ENST00000577751 FFAR4Q5NUL3 377 aa13.99□□□□□ -0.17
SS18-208ENST00000577751 ZNF705AQ6ZN79 300 aaPredicted RBP13.99□□□□□ -0.17
SS18-208ENST00000577751 RPUSD4Q96CM3 377 aaKnown RBP13.99□□□□□ -0.17
SS18-208ENST00000577751 MFFQ9GZY8 342 aa13.99□□□□□ -0.17
SS18-208ENST00000577751 FUT9Q9Y231 359 aa13.99□□□□□ -0.17
SS18-208ENST00000577751 RFNGQ9Y644 331 aa13.99□□□□□ -0.17
SS18-208ENST00000577751 RNF222A6NCQ9 220 aa13.98□□□□□ -0.17
SS18-208ENST00000577751 RBMY1A1P0DJD3 496 aaKnown RBP13.98□□□□□ -0.17
SS18-208ENST00000577751 RBMY1CP0DJD4 496 aa13.98□□□□□ -0.17
SS18-208ENST00000577751 ZNF266Q14584 549 aa13.98□□□□□ -0.17
SS18-208ENST00000577751 RBMY1FQ15415 496 aaKnown RBP13.98□□□□□ -0.17
SS18-208ENST00000577751 TNFSF18Q9UNG2 199 aa13.98□□□□□ -0.17
SS18-208ENST00000577751 TIMM9Q9Y5J7 89 aa13.98□□□□□ -0.17
SS18-208ENST00000577751 STARD9Q9P2P6 4700 aa13.98□□□□□ -0.17
SS18-208ENST00000577751 IGHV4-28A0A0C4DH34 117 aa13.97□□□□□ -0.17
SS18-208ENST00000577751 ZNF705FA8MVS1 300 aaPredicted RBP13.97□□□□□ -0.17
SS18-208ENST00000577751 DEFB4AO15263 64 aa13.97□□□□□ -0.17
SS18-208ENST00000577751 NDUFB4O95168 129 aa13.97□□□□□ -0.17
SS18-208ENST00000577751 PDE6HQ13956 83 aa13.97□□□□□ -0.17
SS18-208ENST00000577751 INO80EQ8NBZ0 244 aaPredicted RBP13.97□□□□□ -0.17
SS18-208ENST00000577751 NEU1Q99519 415 aa13.97□□□□□ -0.17
SS18-208ENST00000577751 OR51M1Q9H341 326 aa13.97□□□□□ -0.17
SS18-208ENST00000577751 KMT2CQ8NEZ4 4911 aaKnown RBP13.96□□□□□ -0.17
SS18-208ENST00000577751 FXYD6-FXYD2A0A087WZ82 144 aa13.96□□□□□ -0.17
SS18-208ENST00000577751 AMBPP02760 352 aa13.96□□□□□ -0.17
SS18-208ENST00000577751 HIST1H1AQ02539 215 aaPredicted RBP13.96□□□□□ -0.17
SS18-208ENST00000577751 PRAC2D3DTV9 90 aa13.95□□□□□ -0.18
SS18-208ENST00000577751 CRXO43186 299 aaPredicted RBP13.95□□□□□ -0.18
SS18-208ENST00000577751 PRB4P10163 310 aaPredicted RBP13.95□□□□□ -0.18
SS18-208ENST00000577751 RHOBP62745 196 aa13.95□□□□□ -0.18
SS18-208ENST00000577751 C1orf158Q8N1D5 194 aa13.95□□□□□ -0.18
SS18-208ENST00000577751 MRPL53Q96EL3 112 aaKnown RBP13.95□□□□□ -0.18
SS18-208ENST00000577751 IGF2BP2-AS1Q96M15 143 aa13.95□□□□□ -0.18
SS18-208ENST00000577751 SMIM9A6NGZ8 99 aa13.94□□□□□ -0.18
SS18-208ENST00000577751 NBEAP1P0C6P0 100 aa13.94□□□□□ -0.18
SS18-208ENST00000577751 M6PRP20645 277 aa13.94□□□□□ -0.18
SS18-208ENST00000577751 SPINK13Q1W4C9 94 aa13.94□□□□□ -0.18
SS18-208ENST00000577751 C11orf45Q8TAV5 145 aa13.94□□□□□ -0.18
SS18-208ENST00000577751 FXYD5Q96DB9 178 aa13.94□□□□□ -0.18
SS18-208ENST00000577751 ZNF503Q96F45 646 aa13.94□□□□□ -0.18
SS18-208ENST00000577751 PAXXQ9BUH6 204 aa13.94□□□□□ -0.18
SS18-208ENST00000577751 BOLA2-SMG1P6H3BVE0 249 aa13.93□□□□□ -0.18
SS18-208ENST00000577751 M0R2Z0 102 aa13.93□□□□□ -0.18
SS18-208ENST00000577751 ACOT6Q3I5F7 207 aaPredicted RBP13.93□□□□□ -0.18
SS18-208ENST00000577751 HSD17B11Q8NBQ5 300 aa13.93□□□□□ -0.18
SS18-208ENST00000577751 OR2G3Q8NGZ4 309 aa13.93□□□□□ -0.18
SS18-208ENST00000577751 BLNKQ8WV28 456 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms