RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 SMLR1H3BR10 107 aa9.9□□□□□ -0.82
CIITA-210ENST00000575513 ST6GAL2Q96JF0 529 aa9.9□□□□□ -0.82
CIITA-210ENST00000575513 C11orf68Q9H3H3 251 aaKnown RBP9.9□□□□□ -0.82
CIITA-210ENST00000575513 TIMM9Q9Y5J7 89 aa9.9□□□□□ -0.82
CIITA-210ENST00000575513 CSMD3Q7Z407 3707 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 A0A0J9YX75 114 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 HMSDA8MTL9 139 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 A8MTW9 85 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 ZNF705EA8MWA4 302 aaPredicted RBP9.89□□□□□ -0.83
CIITA-210ENST00000575513 C4BPBP20851 252 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 GUK1Q16774 197 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 GDF5OSQ5U4N7 250 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 LCN15Q6UWW0 184 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 TCTE3Q8IZS6 198 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 C20orf173Q96LM9 149 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 MFFQ9GZY8 342 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 HRH4Q9H3N8 390 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 CLEC5AQ9NY25 188 aa9.89□□□□□ -0.83
CIITA-210ENST00000575513 KMT2CQ8NEZ4 4911 aaKnown RBP9.88□□□□□ -0.83
CIITA-210ENST00000575513 AGRNO00468 2067 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 TAAR5O14804 337 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 ARPC5O15511 151 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 DUSP14O95147 198 aaKnown RBP9.88□□□□□ -0.83
CIITA-210ENST00000575513 PSG9Q00887 426 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 ZNF345Q14585 488 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 MORN5Q5VZ52 161 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 OR11H4Q8NGC9 324 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 LRRC20Q8TCA0 184 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 SLC50A1Q9BRV3 221 aa9.88□□□□□ -0.83
CIITA-210ENST00000575513 BORCS7-ASMTA0A0B4J1R7 106 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 IGLC2P0DOY2 106 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 MIFP14174 115 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 PSG3Q16557 428 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 GCSAMLQ5JQS6 135 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 FFAR4Q5NUL3 377 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 FAM78BQ5VT40 261 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 KCNRGQ8N5I3 272 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 OR2G3Q8NGZ4 309 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 PSMG3Q9BT73 122 aaPredicted RBP9.87□□□□□ -0.83
CIITA-210ENST00000575513 MRPL32Q9BYC8 188 aaKnown RBP9.87□□□□□ -0.83
CIITA-210ENST00000575513 ZNF331Q9NQX6 463 aaPredicted RBP9.87□□□□□ -0.83
CIITA-210ENST00000575513 TMEM14CQ9P0S9 112 aa9.87□□□□□ -0.83
CIITA-210ENST00000575513 ZNF253O75346 499 aa9.86□□□□□ -0.83
CIITA-210ENST00000575513 DEFB1P60022 68 aa9.86□□□□□ -0.83
CIITA-210ENST00000575513 ZFAND6Q6FIF0 208 aa9.86□□□□□ -0.83
CIITA-210ENST00000575513 OR4B1Q8NGF8 309 aa9.86□□□□□ -0.83
CIITA-210ENST00000575513 SAT2Q96F10 170 aaPredicted RBP9.86□□□□□ -0.83
CIITA-210ENST00000575513 NEU1Q99519 415 aa9.86□□□□□ -0.83
CIITA-210ENST00000575513 XCL2Q9UBD3 114 aa9.86□□□□□ -0.83
CIITA-210ENST00000575513 TRAV5A0A0B4J249 113 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 A0A0D9SG52 128 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 F6UB75 175 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 JTBO76095 146 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 AMBPP02760 352 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 ATP6V0CP27449 155 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 SERF2P84101 59 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 ACOT6Q3I5F7 207 aaPredicted RBP9.85□□□□□ -0.83
CIITA-210ENST00000575513 IGFL4Q6B9Z1 124 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 RPL7L1Q6DKI1 246 aaKnown RBP9.85□□□□□ -0.83
CIITA-210ENST00000575513 ZNF705AQ6ZN79 300 aaPredicted RBP9.85□□□□□ -0.83
CIITA-210ENST00000575513 RNF182Q8N6D2 247 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 Q8NAQ8 132 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 HSD17B11Q8NBQ5 300 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 ZNF738Q8NE65 137 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 GNPNAT1Q96EK6 184 aaPredicted RBP9.85□□□□□ -0.83
CIITA-210ENST00000575513 CYTL1Q9NRR1 136 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 X6R8D5 127 aa9.85□□□□□ -0.83
CIITA-210ENST00000575513 STARD9Q9P2P6 4700 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 hCG_2014768A0A024R1R8 64 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 SMIM9A6NGZ8 99 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 H3BQ15 152 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 IGKV3-20P01619 116 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 HIST1H1EP10412 219 aaKnown RBP9.84□□□□□ -0.83
CIITA-210ENST00000575513 M6PRP20645 277 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 CNN1P51911 297 aaKnown RBP9.84□□□□□ -0.83
CIITA-210ENST00000575513 PDE6HQ13956 83 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 AMTNQ6UX39 209 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 AKAP14Q86UN6 197 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 OR8A1Q8NGG7 326 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 FAM167A-AS1Q96KT0 104 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 FUT9Q9Y231 359 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 RFNGQ9Y644 331 aa9.84□□□□□ -0.83
CIITA-210ENST00000575513 ZNF705FA8MVS1 300 aaPredicted RBP9.83□□□□□ -0.84
CIITA-210ENST00000575513 C1QBP02746 253 aa9.83□□□□□ -0.84
CIITA-210ENST00000575513 ZNF705DP0CH99 300 aaPredicted RBP9.83□□□□□ -0.84
CIITA-210ENST00000575513 ZNF705BP0CI00 300 aaPredicted RBP9.83□□□□□ -0.84
CIITA-210ENST00000575513 RHOBP62745 196 aa9.83□□□□□ -0.84
CIITA-210ENST00000575513 MIR17HGQ75NE6 70 aa9.83□□□□□ -0.84
CIITA-210ENST00000575513 RPUSD4Q96CM3 377 aaKnown RBP9.83□□□□□ -0.84
CIITA-210ENST00000575513 ARPC5LQ9BPX5 153 aa9.83□□□□□ -0.84
CIITA-210ENST00000575513 SLC25A2Q9BXI2 301 aa9.83□□□□□ -0.84
CIITA-210ENST00000575513 SLC35B3Q9H1N7 401 aa9.83□□□□□ -0.84
CIITA-210ENST00000575513 ZNF586Q9NXT0 402 aa9.83□□□□□ -0.84
CIITA-210ENST00000575513 TRBV19A0A075B6N1 114 aa9.82□□□□□ -0.84
CIITA-210ENST00000575513 IGHV4-28A0A0C4DH34 117 aa9.82□□□□□ -0.84
CIITA-210ENST00000575513 A0A1B0GVG6 124 aa9.82□□□□□ -0.84
CIITA-210ENST00000575513 NUPR2A6NF83 97 aa9.82□□□□□ -0.84
CIITA-210ENST00000575513 MBP02144 154 aa9.82□□□□□ -0.84
CIITA-210ENST00000575513 RBMY1A1P0DJD3 496 aaKnown RBP9.82□□□□□ -0.84
CIITA-210ENST00000575513 RBMY1CP0DJD4 496 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms