RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 DNAJC4Q9NNZ3 241 aa14.57□□□□□ -0.08
NUP88-204ENST00000572290 DUSP14O95147 198 aaKnown RBP14.56□□□□□ -0.08
NUP88-204ENST00000572290 FGF7P21781 194 aa14.56□□□□□ -0.08
NUP88-204ENST00000572290 B2MP61769 119 aa14.56□□□□□ -0.08
NUP88-204ENST00000572290 NHLH2Q02577 135 aa14.56□□□□□ -0.08
NUP88-204ENST00000572290 ZNF738Q8NE65 137 aa14.56□□□□□ -0.08
NUP88-204ENST00000572290 CHAC2Q8WUX2 184 aa14.56□□□□□ -0.08
NUP88-204ENST00000572290 HRH4Q9H3N8 390 aa14.56□□□□□ -0.08
NUP88-204ENST00000572290 A8MTW9 85 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 MPDU1O75352 247 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 CXCL2P19875 107 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 CXCL3P19876 107 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 MORN5Q5VZ52 161 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 ZNF705AQ6ZN79 300 aaPredicted RBP14.55□□□□□ -0.08
NUP88-204ENST00000572290 OR5C1Q8NGR4 320 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 PPP1R1CQ8WVI7 109 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 PFDN5Q99471 154 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 SLC39A9Q9NUM3 307 aa14.55□□□□□ -0.08
NUP88-204ENST00000572290 HLA-DMBP28068 263 aa14.54□□□□□ -0.08
NUP88-204ENST00000572290 CNN1P51911 297 aaKnown RBP14.54□□□□□ -0.08
NUP88-204ENST00000572290 PSG3Q16557 428 aa14.54□□□□□ -0.08
NUP88-204ENST00000572290 LCN15Q6UWW0 184 aa14.54□□□□□ -0.08
NUP88-204ENST00000572290 NEU1Q99519 415 aa14.54□□□□□ -0.08
NUP88-204ENST00000572290 PXMP4Q9Y6I8 212 aa14.54□□□□□ -0.08
NUP88-204ENST00000572290 ALMS1Q8TCU4 4167 aa14.54□□□□□ -0.08
NUP88-204ENST00000572290 HYDINQ4G0P3 5121 aa14.54□□□□□ -0.08
NUP88-204ENST00000572290 IGHV3OR16-12A0A075B7B8 117 aa14.53□□□□□ -0.08
NUP88-204ENST00000572290 ZNF705FA8MVS1 300 aaPredicted RBP14.53□□□□□ -0.08
NUP88-204ENST00000572290 SNRPCP09234 159 aaKnown RBP14.53□□□□□ -0.08
NUP88-204ENST00000572290 ZNF705DP0CH99 300 aaPredicted RBP14.53□□□□□ -0.08
NUP88-204ENST00000572290 ZNF705BP0CI00 300 aaPredicted RBP14.53□□□□□ -0.08
NUP88-204ENST00000572290 AMTNQ6UX39 209 aa14.53□□□□□ -0.08
NUP88-204ENST00000572290 SLC50A1Q9BRV3 221 aa14.53□□□□□ -0.08
NUP88-204ENST00000572290 AGRNO00468 2067 aa14.53□□□□□ -0.08
NUP88-204ENST00000572290 TRAV5A0A0B4J249 113 aa14.52□□□□□ -0.09
NUP88-204ENST00000572290 SMIM9A6NGZ8 99 aa14.52□□□□□ -0.09
NUP88-204ENST00000572290 PET100P0DJ07 73 aa14.52□□□□□ -0.09
NUP88-204ENST00000572290 THAP6Q8TBB0 222 aa14.52□□□□□ -0.09
NUP88-204ENST00000572290 NPCDR1Q9BY65 106 aa14.52□□□□□ -0.09
NUP88-204ENST00000572290 ZNF331Q9NQX6 463 aaPredicted RBP14.52□□□□□ -0.09
NUP88-204ENST00000572290 GOLT1BQ9Y3E0 138 aa14.52□□□□□ -0.09
NUP88-204ENST00000572290 MPC2O95563 127 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 PTTG1O95997 202 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 AMBPP02760 352 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 IGLC2P0DOY2 106 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 CLINT1Q14677 625 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 OR11H7Q8NGC8 314 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 OR8A1Q8NGG7 326 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 LINC00476Q8WZB0 136 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 RNF126Q9BV68 326 aa14.51□□□□□ -0.09
NUP88-204ENST00000572290 C11orf94C9JXX5 98 aa14.5□□□□□ -0.09
NUP88-204ENST00000572290 H3BTX0 84 aa14.5□□□□□ -0.09
NUP88-204ENST00000572290 HIST1H1AQ02539 215 aaPredicted RBP14.5□□□□□ -0.09
NUP88-204ENST00000572290 C1orf158Q8N1D5 194 aa14.5□□□□□ -0.09
NUP88-204ENST00000572290 RPUSD4Q96CM3 377 aaKnown RBP14.5□□□□□ -0.09
NUP88-204ENST00000572290 IGF2BP2-AS1Q96M15 143 aa14.5□□□□□ -0.09
NUP88-204ENST00000572290 ALG5Q9Y673 324 aa14.5□□□□□ -0.09
NUP88-204ENST00000572290 TMEM189A5PLL7 270 aa14.49□□□□□ -0.09
NUP88-204ENST00000572290 H3BQ15 152 aa14.49□□□□□ -0.09
NUP88-204ENST00000572290 GUK1Q16774 197 aa14.49□□□□□ -0.09
NUP88-204ENST00000572290 SPINK13Q1W4C9 94 aa14.49□□□□□ -0.09
NUP88-204ENST00000572290 C2CD4CQ8TF44 421 aa14.49□□□□□ -0.09
NUP88-204ENST00000572290 WDR61Q9GZS3 305 aaKnown RBP14.49□□□□□ -0.09
NUP88-204ENST00000572290 CELA1Q9UNI1 258 aa14.49□□□□□ -0.09
NUP88-204ENST00000572290 RFNGQ9Y644 331 aa14.49□□□□□ -0.09
NUP88-204ENST00000572290 M0R2Z0 102 aa14.48□□□□□ -0.09
NUP88-204ENST00000572290 SLC17A3O00476 420 aa14.48□□□□□ -0.09
NUP88-204ENST00000572290 LY6G6CO95867 125 aa14.48□□□□□ -0.09
NUP88-204ENST00000572290 RHOBP62745 196 aa14.48□□□□□ -0.09
NUP88-204ENST00000572290 Q6ZTC4 211 aa14.48□□□□□ -0.09
NUP88-204ENST00000572290 SAT2Q96F10 170 aaPredicted RBP14.48□□□□□ -0.09
NUP88-204ENST00000572290 PPP1R14DQ9NXH3 145 aa14.48□□□□□ -0.09
NUP88-204ENST00000572290 BOLA2-SMG1P6H3BVE0 249 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 HBE1P02100 147 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 PRB4P10163 310 aaPredicted RBP14.47□□□□□ -0.09
NUP88-204ENST00000572290 EMP1P54849 157 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 GCSAMLQ5JQS6 135 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 ATP5SQ99766 215 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 TMEM208Q9BTX3 173 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 KCNIP2Q9NS61 270 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 MBD2Q9UBB5 411 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 HSPB11Q9Y547 144 aa14.47□□□□□ -0.09
NUP88-204ENST00000572290 TRAV10A0A0B4J240 114 aa14.46□□□□□ -0.09
NUP88-204ENST00000572290 CRXO43186 299 aaPredicted RBP14.46□□□□□ -0.09
NUP88-204ENST00000572290 INSP01308 110 aa14.46□□□□□ -0.09
NUP88-204ENST00000572290 RPL12P30050 165 aaKnown RBP14.46□□□□□ -0.09
NUP88-204ENST00000572290 C12orf74Q32Q52 190 aa14.46□□□□□ -0.09
NUP88-204ENST00000572290 ZNF586Q9NXT0 402 aa14.46□□□□□ -0.09
NUP88-204ENST00000572290 TMEM14CQ9P0S9 112 aa14.46□□□□□ -0.09
NUP88-204ENST00000572290 C17orf112F2Z3M2 114 aa14.45□□□□□ -0.1
NUP88-204ENST00000572290 SPART-AS1P0CW21 52 aa14.45□□□□□ -0.1
NUP88-204ENST00000572290 RRN3P1Q2M238 152 aa14.45□□□□□ -0.1
NUP88-204ENST00000572290 ZNF767PQ75MW2 155 aa14.45□□□□□ -0.1
NUP88-204ENST00000572290 LOC102723971A0A1B0GUV8 181 aa14.44□□□□□ -0.1
NUP88-204ENST00000572290 ZNF253O75346 499 aa14.44□□□□□ -0.1
NUP88-204ENST00000572290 HIST1H1EP10412 219 aaKnown RBP14.44□□□□□ -0.1
NUP88-204ENST00000572290 TCTAP57738 103 aa14.44□□□□□ -0.1
NUP88-204ENST00000572290 BAP18Q8IXM2 172 aa14.44□□□□□ -0.1
NUP88-204ENST00000572290 TRBV19A0A075B6N1 114 aa14.43□□□□□ -0.1
NUP88-204ENST00000572290 TRAV12-2A0A075B6T6 113 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms