RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 CLEC5AQ9NY25 188 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 SMPXQ9UHP9 88 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 U3KQE9 123 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 FBN3Q75N90 2809 aa4.89□□□□□ -1.63
VPS53-209ENST00000570771 TRAV5A0A0B4J249 113 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 A0A1B0GV50 99 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 LINC00862A6NCI5 91 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 C2orf70A6NJV1 201 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 ZNF785A8K8V0 405 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 CHEK1O14757 476 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 HMGB3O15347 200 aaKnown RBP4.88□□□□□ -1.63
VPS53-209ENST00000570771 ZNF253O75346 499 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 NDUFS6O75380 124 aaKnown RBP4.88□□□□□ -1.63
VPS53-209ENST00000570771 NBEAP1P0C6P0 100 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 FGF8P55075 233 aaPredicted RBP4.88□□□□□ -1.63
VPS53-209ENST00000570771 PAFAH1B2P68402 229 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 PSG9Q00887 426 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 PDE6HQ13956 83 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 PEA15Q15121 130 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 TM4SF20Q53R12 229 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 LCE4AQ5TA78 99 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 LEMD1Q68G75 181 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 SIGLEC15Q6ZMC9 328 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 LYPD1Q8N2G4 141 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 LINC00482Q8N8I6 264 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 DYNLRB2Q8TF09 96 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 DLX4Q92988 240 aaPredicted RBP4.88□□□□□ -1.63
VPS53-209ENST00000570771 FAM167A-AS1Q96KT0 104 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 FAM210AQ96ND0 272 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 TCEAL7Q9BRU2 100 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 EIF5A2Q9GZV4 153 aaKnown RBP4.88□□□□□ -1.63
VPS53-209ENST00000570771 AAMDCQ9H7C9 122 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 SIGLEC8Q9NYZ4 499 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 GNG13Q9P2W3 67 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 VAX2Q9UIW0 290 aa4.88□□□□□ -1.63
VPS53-209ENST00000570771 HUWE1Q7Z6Z7 4374 aaKnown RBP4.87□□□□□ -1.63
VPS53-209ENST00000570771 A0A087X0K7 114 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 A0A1W2PRE2 83 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 TMEM213A2RRL7 107 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 RBFOX3A6NFN3 312 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 F6UZH7 168 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 OR10J4P0C629 311 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 PYYP10082 97 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 BCL2P10415 239 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 FOLR2P14207 255 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 GP9P14770 177 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 CBLN1P23435 193 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 ID1P41134 155 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 RPL11P62913 178 aaKnown RBP4.87□□□□□ -1.63
VPS53-209ENST00000570771 MORN5Q5VZ52 161 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 CST9LP1Q5W188 147 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 UQCC3Q6UW78 93 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 SSX7Q7RTT5 188 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 TCF24Q7RTU0 167 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 COMMD7Q86VX2 200 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 PCNPQ8WW12 178 aaKnown RBP4.87□□□□□ -1.63
VPS53-209ENST00000570771 GLMPQ8WWB7 406 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 SLC50A1Q9BRV3 221 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 MCRIP2Q9BUT9 160 aaKnown RBP4.87□□□□□ -1.63
VPS53-209ENST00000570771 GPR61Q9BZJ8 451 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 PRELID1Q9Y255 219 aa4.87□□□□□ -1.63
VPS53-209ENST00000570771 NOTCH3Q9UM47 2321 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 TRBV19A0A075B6N1 114 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 IGHV3OR16-13A0A075B7E8 117 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 IGHV3-49A0A0A0MS15 119 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 IGHV3-74A0A0B4J1X5 117 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 TRAV2A0A0B4J234 112 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 TRAV25A0A0B4J276 109 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 IGHV3-66A0A0C4DH42 116 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 LOC102723971A0A1B0GUV8 181 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 K7EQM0 130 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 DNASE2O00115 360 aaPredicted RBP4.86□□□□□ -1.63
VPS53-209ENST00000570771 PDE6DO43924 150 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 PAGE4O60829 102 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 APOHP02749 345 aaPredicted RBP4.86□□□□□ -1.63
VPS53-209ENST00000570771 IGLC2P0DOY2 106 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 CSN1S1P47710 185 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 INSL3P51460 131 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 MEF2BQ02080 365 aaPredicted RBP4.86□□□□□ -1.63
VPS53-209ENST00000570771 HAGHQ16775 308 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 TOR2AQ5JU69 321 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 ZNF506Q5JVG8 444 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 RBPMS2Q6ZRY4 209 aaKnown RBP4.86□□□□□ -1.63
VPS53-209ENST00000570771 EIF4E3Q8N5X7 224 aaKnown RBP4.86□□□□□ -1.63
VPS53-209ENST00000570771 ARL6IP6Q8N6S5 226 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 OR2K2Q8NGT1 345 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 CMTM2Q8TAZ6 248 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 RXFP4Q8TDU9 374 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 BLNKQ8WV28 456 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 RPUSD4Q96CM3 377 aaKnown RBP4.86□□□□□ -1.63
VPS53-209ENST00000570771 FXYD5Q96DB9 178 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 ZNF503Q96F45 646 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 TMPRSS5Q9H3S3 457 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 TREM1Q9NP99 234 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 NRN1Q9NPD7 142 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 OTORQ9NRC9 128 aa4.86□□□□□ -1.63
VPS53-209ENST00000570771 SERTM2A0A1B0GWG4 89 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 OR4C46A6NHA9 309 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 FAM74A7A6NL05 159 aa4.85□□□□□ -1.63
VPS53-209ENST00000570771 C11orf94C9JXX5 98 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms