RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PIGPP57054 158 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 SLAQ13239 276 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 ASAH1Q13510 395 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 ARRDC1Q8N5I2 433 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 C15orf40Q8WUR7 153 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 SLC35E1Q96K37 410 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 EXTL2Q9UBQ6 330 aa11.98□□□□□ -0.49
CLK3-227ENST00000570296 A6NHS1 94 aa11.97□□□□□ -0.49
CLK3-227ENST00000570296 CTDSP2O14595 271 aa11.97□□□□□ -0.49
CLK3-227ENST00000570296 GPX4P36969 197 aaPredicted RBP11.97□□□□□ -0.49
CLK3-227ENST00000570296 FGL1Q08830 312 aa11.97□□□□□ -0.49
CLK3-227ENST00000570296 DIRAS2Q96HU8 199 aa11.97□□□□□ -0.49
CLK3-227ENST00000570296 TRGV9Q99603 122 aa11.97□□□□□ -0.49
CLK3-227ENST00000570296 RABL2AQ9UBK7 228 aaPredicted RBP11.97□□□□□ -0.49
CLK3-227ENST00000570296 RABL2BQ9UNT1 228 aa11.97□□□□□ -0.49
CLK3-227ENST00000570296 FUT9Q9Y231 359 aa11.97□□□□□ -0.49
CLK3-227ENST00000570296 RCL1Q9Y2P8 373 aaKnown RBP11.97□□□□□ -0.49
CLK3-227ENST00000570296 U3KQ87 197 aa11.97□□□□□ -0.49
CLK3-227ENST00000570296 IGLV2-8P01709 118 aa11.96□□□□□ -0.49
CLK3-227ENST00000570296 PI3P19957 117 aa11.96□□□□□ -0.49
CLK3-227ENST00000570296 S100A7P31151 101 aa11.96□□□□□ -0.49
CLK3-227ENST00000570296 PRSS3P35030 304 aa11.96□□□□□ -0.49
CLK3-227ENST00000570296 ACOT6Q3I5F7 207 aaPredicted RBP11.96□□□□□ -0.49
CLK3-227ENST00000570296 GFI1BQ5VTD9 330 aa11.96□□□□□ -0.49
CLK3-227ENST00000570296 CACFD1Q9UGQ2 172 aa11.96□□□□□ -0.49
CLK3-227ENST00000570296 B3GALNT1O75752 331 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 CXCL3P19876 107 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 CRYBA4P53673 196 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 SP6Q3SY56 376 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 GGNBP1Q5YKI7 109 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 SNX29P2Q8IUI4 249 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 ST6GAL2Q96JF0 529 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 CACNG5Q9UF02 275 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 TMEM56-RWDD3S4R434 201 aa11.95□□□□□ -0.5
CLK3-227ENST00000570296 TRGV1A0A0A0MS02 117 aa11.94□□□□□ -0.5
CLK3-227ENST00000570296 KRTAP9-6A0A140TA67 174 aa11.94□□□□□ -0.5
CLK3-227ENST00000570296 PRB4P10163 310 aaPredicted RBP11.94□□□□□ -0.5
CLK3-227ENST00000570296 ZNF680Q8NEM1 530 aa11.94□□□□□ -0.5
CLK3-227ENST00000570296 CIRBP-AS1Q8TBR5 109 aa11.94□□□□□ -0.5
CLK3-227ENST00000570296 PYGO2Q9BRQ0 406 aa11.94□□□□□ -0.5
CLK3-227ENST00000570296 MIXL1Q9H2W2 232 aa11.94□□□□□ -0.5
CLK3-227ENST00000570296 FABP12A6NFH5 140 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 IBA57-AS1B1ANH7 110 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 PRAF2O60831 178 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 SRIP30626 198 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 HNRNPA3P51991 378 aaKnown RBP11.93□□□□□ -0.5
CLK3-227ENST00000570296 RPL37AP61513 92 aaKnown RBP11.93□□□□□ -0.5
CLK3-227ENST00000570296 IL18Q14116 193 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 TDRG1Q3Y452 100 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 LGI3Q8N145 548 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 IL22RA2Q969J5 263 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 RPUSD4Q96CM3 377 aaKnown RBP11.93□□□□□ -0.5
CLK3-227ENST00000570296 HHLA3Q9XRX5 114 aa11.93□□□□□ -0.5
CLK3-227ENST00000570296 CDS2O95674 445 aa11.92□□□□□ -0.5
CLK3-227ENST00000570296 TNFSF8P32971 234 aa11.92□□□□□ -0.5
CLK3-227ENST00000570296 ATP5IP56385 69 aaPredicted RBP11.92□□□□□ -0.5
CLK3-227ENST00000570296 ZNF415Q09FC8 603 aa11.92□□□□□ -0.5
CLK3-227ENST00000570296 STEAP1BQ6NZ63 245 aa11.92□□□□□ -0.5
CLK3-227ENST00000570296 C11orf72Q8NBR9 251 aa11.92□□□□□ -0.5
CLK3-227ENST00000570296 RBPMSQ93062 196 aaKnown RBP11.92□□□□□ -0.5
CLK3-227ENST00000570296 DAZAP1Q96EP5 407 aaKnown RBP11.92□□□□□ -0.5
CLK3-227ENST00000570296 GSN-AS1Q9NRJ2 163 aa11.92□□□□□ -0.5
CLK3-227ENST00000570296 COPZ2Q9P299 210 aa11.92□□□□□ -0.5
CLK3-227ENST00000570296 IGKV1OR2-108A0A075B7D4 117 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 MRPS10P82664 201 aaKnown RBP11.91□□□□□ -0.5
CLK3-227ENST00000570296 CNPY1Q3B7I2 92 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 SPANXN2Q5MJ10 180 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 CCDC71LQ8N9Z2 235 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 THAP8Q8NA92 274 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 GPX8Q8TED1 209 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 C8orf49Q96NF6 230 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 TMEM147Q9BVK8 224 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 Q9HAA7 133 aa11.91□□□□□ -0.5
CLK3-227ENST00000570296 K7EQD1 137 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 SPINK4O60575 86 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 GAS8-AS1O95177 125 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 RPL7P18124 248 aaKnown RBP11.9□□□□□ -0.5
CLK3-227ENST00000570296 WFDC2Q14508 124 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 LINC01556Q5JQF7 62 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 CCDC190Q86UF4 302 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 LHFPL1Q86WI0 220 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 PARD6GQ9BYG4 376 aaPredicted RBP11.9□□□□□ -0.5
CLK3-227ENST00000570296 TMEM222Q9H0R3 208 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 DNAJC4Q9NNZ3 241 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 FAT4Q6V0I7 4981 aa11.9□□□□□ -0.5
CLK3-227ENST00000570296 A0A087X0K7 114 aa11.89□□□□□ -0.51
CLK3-227ENST00000570296 IGHV3-38A0A0C4DH36 116 aa11.89□□□□□ -0.51
CLK3-227ENST00000570296 IGLV2-11P01706 119 aa11.89□□□□□ -0.51
CLK3-227ENST00000570296 IGHV3-53P01767 116 aa11.89□□□□□ -0.51
CLK3-227ENST00000570296 ORM2P19652 201 aa11.89□□□□□ -0.51
CLK3-227ENST00000570296 FHL2Q14192 279 aa11.89□□□□□ -0.51
CLK3-227ENST00000570296 VGLL1Q99990 258 aa11.89□□□□□ -0.51
CLK3-227ENST00000570296 TRAV12-3A0A0B4J271 114 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 GYPEP15421 78 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 LINC01620Q4KN68 170 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 PYDC2Q56P42 97 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 MORN5Q5VZ52 161 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 BPIFCQ8NFQ6 507 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 LHFPL5Q8TAF8 219 aa11.88□□□□□ -0.51
CLK3-227ENST00000570296 LRRC20Q8TCA0 184 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms