RNA–Protein interactions for RNA: ENST00000569390.1

NEIL1-222, Transcript of nei like DNA glycosylase 1, human

TSL 3

Gene NEIL1, Length 346 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEIL1-222	ENST00000569390	C1orf158	Q8N1D5	194 aa		13.43	□□□□□ -0.26
NEIL1-222	ENST00000569390	RNF182	Q8N6D2	247 aa		13.43	□□□□□ -0.26
NEIL1-222	ENST00000569390	PTTG2	Q9NZH5	202 aa		13.43	□□□□□ -0.26
NEIL1-222	ENST00000569390	IGHV4-4	A0A075B6R2	117 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	FAM24A	A6NFZ4	105 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390		A6NHS1	94 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	MRPS12	O15235	138 aa	Known RBP	13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	PSG3	Q16557	428 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	RRN3P1	Q2M238	152 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	VWC2	Q2TAL6	325 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	C10orf113	Q5VZT2	155 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	OR11H7	Q8NGC8	314 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	SLC50A1	Q9BRV3	221 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	TMEM208	Q9BTX3	173 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	WDR83OS	Q9Y284	106 aa		13.42	□□□□□ -0.26
NEIL1-222	ENST00000569390	INS	P01308	110 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	EMP1	P54849	157 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	RAB32	Q13637	225 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	ATP6V1F	Q16864	119 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	IGFL4	Q6B9Z1	124 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	NRARP	Q7Z6K4	114 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	TMEM252	Q8N6L7	170 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	OR8A1	Q8NGG7	326 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	OR1L4	Q8NGR5	311 aa		13.41	□□□□□ -0.26
NEIL1-222	ENST00000569390	LOC102723971	A0A1B0GUV8	181 aa		13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	BOLA2-SMG1P6	H3BVE0	249 aa		13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	PRAF2	O60831	178 aa		13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	OXA1L	Q15070	435 aa		13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	RPP25L	Q8N5L8	163 aa	Known RBP	13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	TMEM37	Q8WXS4	190 aa		13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	PFDN5	Q99471	154 aa		13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	DNAJC4	Q9NNZ3	241 aa		13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	DKK2	Q9UBU2	259 aa		13.4	□□□□□ -0.26
NEIL1-222	ENST00000569390	VPS13D	Q5THJ4	4388 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	BIRC6	Q9NR09	4857 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	RPL29	P47914	159 aa	Known RBP	13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	PRR20E	P86478	221 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	PRR20C	P86479	221 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	PRR20D	P86480	221 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	PRR20B	P86481	221 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	PRR20A	P86496	221 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	HIST1H1A	Q02539	215 aa	Predicted RBP	13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	SPINK13	Q1W4C9	94 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	ZNF767P	Q75MW2	155 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	CHAC2	Q8WUX2	184 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	FAM210B	Q96KR6	192 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	NIPSNAP3B	Q9BS92	247 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	ZNF331	Q9NQX6	463 aa	Predicted RBP	13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	PPP1R14D	Q9NXH3	145 aa		13.39	□□□□□ -0.27
NEIL1-222	ENST00000569390	IGSF23	A1L1A6	192 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390		M0R2Z0	102 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	MPDU1	O75352	247 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	RLN2	P04090	185 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	RHOB	P62745	196 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	BAX	Q07812	192 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	OPCML	Q14982	345 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	FAM222A	Q5U5X8	452 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	MIC13	Q5XKP0	118 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	RPUSD4	Q96CM3	377 aa	Known RBP	13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	NDUFAF3	Q9BU61	184 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	YTHDF2	Q9Y5A9	579 aa	Known RBP	13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	PXMP4	Q9Y6I8	212 aa		13.38	□□□□□ -0.27
NEIL1-222	ENST00000569390	UBE2L5P	A0A1B0GUS4	154 aa		13.37	□□□□□ -0.27
NEIL1-222	ENST00000569390	CRX	O43186	299 aa	Predicted RBP	13.37	□□□□□ -0.27
NEIL1-222	ENST00000569390	CYCS	P99999	105 aa	Known RBP	13.37	□□□□□ -0.27
NEIL1-222	ENST00000569390	GUK1	Q16774	197 aa		13.37	□□□□□ -0.27
NEIL1-222	ENST00000569390	TMEM256	Q8N2U0	113 aa		13.37	□□□□□ -0.27
NEIL1-222	ENST00000569390	KMT2A	Q03164	3969 aa		13.37	□□□□□ -0.27
NEIL1-222	ENST00000569390	INMT-MINDY4	F8WBC2	141 aa		13.36	□□□□□ -0.27
NEIL1-222	ENST00000569390	IGLC2	P0DOY2	106 aa		13.36	□□□□□ -0.27
NEIL1-222	ENST00000569390	TSPO	P30536	169 aa		13.36	□□□□□ -0.27
NEIL1-222	ENST00000569390	NMES1	Q9C002	83 aa		13.36	□□□□□ -0.27
NEIL1-222	ENST00000569390	SLC25A31	Q9H0C2	315 aa		13.36	□□□□□ -0.27
NEIL1-222	ENST00000569390	SLC39A9	Q9NUM3	307 aa		13.36	□□□□□ -0.27
NEIL1-222	ENST00000569390		E5RGE8	158 aa		13.35	□□□□□ -0.27
NEIL1-222	ENST00000569390		P0DMU3	169 aa		13.35	□□□□□ -0.27
NEIL1-222	ENST00000569390	FAM231A	P0DMU4	169 aa		13.35	□□□□□ -0.27
NEIL1-222	ENST00000569390	FAM231C	P0DMU5	169 aa		13.35	□□□□□ -0.27
NEIL1-222	ENST00000569390	DEFA1	P59665	94 aa		13.35	□□□□□ -0.27
NEIL1-222	ENST00000569390	DEFA3	P59666	94 aa		13.35	□□□□□ -0.27
NEIL1-222	ENST00000569390	LYRM9	A8MSI8	78 aa		13.34	□□□□□ -0.27
NEIL1-222	ENST00000569390	ZNF253	O75346	499 aa		13.34	□□□□□ -0.27
NEIL1-222	ENST00000569390	FGF7	P21781	194 aa		13.34	□□□□□ -0.27
NEIL1-222	ENST00000569390	CDKN1B	P46527	198 aa		13.34	□□□□□ -0.27
NEIL1-222	ENST00000569390	IFITM3	Q01628	133 aa		13.34	□□□□□ -0.27
NEIL1-222	ENST00000569390	MORN5	Q5VZ52	161 aa		13.34	□□□□□ -0.27
NEIL1-222	ENST00000569390	BAP18	Q8IXM2	172 aa		13.34	□□□□□ -0.27
NEIL1-222	ENST00000569390	OR10J6P	Q8NGY7	276 aa		13.34	□□□□□ -0.27
NEIL1-222	ENST00000569390	DAD1	P61803	113 aa		13.33	□□□□□ -0.28
NEIL1-222	ENST00000569390	SAT2	Q96F10	170 aa	Predicted RBP	13.33	□□□□□ -0.28
NEIL1-222	ENST00000569390	C20orf144	Q9BQM9	153 aa		13.33	□□□□□ -0.28
NEIL1-222	ENST00000569390	MARVELD1	Q9BSK0	173 aa		13.33	□□□□□ -0.28
NEIL1-222	ENST00000569390	TRAV12-2	A0A075B6T6	113 aa		13.32	□□□□□ -0.28
NEIL1-222	ENST00000569390	ZNF705G	A8MUZ8	300 aa	Predicted RBP	13.32	□□□□□ -0.28
NEIL1-222	ENST00000569390		H3BQ15	152 aa		13.32	□□□□□ -0.28
NEIL1-222	ENST00000569390	SLC17A3	O00476	420 aa		13.32	□□□□□ -0.28
NEIL1-222	ENST00000569390	SIX6	O95475	246 aa		13.32	□□□□□ -0.28
NEIL1-222	ENST00000569390	TAS2R60	P59551	318 aa		13.32	□□□□□ -0.28
NEIL1-222	ENST00000569390	LINC01587	Q99440	93 aa		13.32	□□□□□ -0.28
NEIL1-222	ENST00000569390	NPCDR1	Q9BY65	106 aa		13.32	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms