RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 OR4E1P0C645 316 aa11.86□□□□□ -0.51
CLN3-231ENST00000568422 CXCL2P19875 107 aa11.86□□□□□ -0.51
CLN3-231ENST00000568422 ATP5G3P48201 142 aa11.86□□□□□ -0.51
CLN3-231ENST00000568422 HIST1H1AQ02539 215 aaPredicted RBP11.86□□□□□ -0.51
CLN3-231ENST00000568422 LINC01587Q99440 93 aa11.86□□□□□ -0.51
CLN3-231ENST00000568422 SRRQ9GZT4 340 aa11.86□□□□□ -0.51
CLN3-231ENST00000568422 ARL6Q9H0F7 186 aa11.86□□□□□ -0.51
CLN3-231ENST00000568422 TRAV12-2A0A075B6T6 113 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 A6NHS1 94 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 PRM2P04554 102 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 METTL15P1P0C7V9 234 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 ANXA7P20073 488 aaKnown RBP11.85□□□□□ -0.51
CLN3-231ENST00000568422 AZU1P20160 251 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 CDKN1BP46527 198 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 RRAS2P62070 204 aaPredicted RBP11.85□□□□□ -0.51
CLN3-231ENST00000568422 TRIQKQ629K1 86 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 ZNF493Q6ZR52 646 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 ZNF546Q86UE3 836 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 C16orf74Q96GX8 76 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 GGACTQ9BVM4 153 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 ARV1Q9H2C2 271 aa11.85□□□□□ -0.51
CLN3-231ENST00000568422 TIMM8BQ9Y5J9 83 aaPredicted RBP11.85□□□□□ -0.51
CLN3-231ENST00000568422 CENPXA8MT69 81 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 F5H768 121 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 ZNF701M0R085 212 aaPredicted RBP11.84□□□□□ -0.51
CLN3-231ENST00000568422 GOSR2O14653 212 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 IAH1Q2TAA2 248 aaPredicted RBP11.84□□□□□ -0.51
CLN3-231ENST00000568422 CNPY1Q3B7I2 92 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 C4orf46Q504U0 113 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 LCN15Q6UWW0 184 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 PATE2Q6UY27 113 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 RPUSD4Q96CM3 377 aaKnown RBP11.84□□□□□ -0.51
CLN3-231ENST00000568422 C20orf144Q9BQM9 153 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 SLC50A1Q9BRV3 221 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 FLVCR2Q9UPI3 526 aa11.84□□□□□ -0.51
CLN3-231ENST00000568422 DNAH11Q96DT5 4516 aa11.83□□□□□ -0.51
CLN3-231ENST00000568422 DYNC1H1Q14204 4646 aaKnown RBP11.83□□□□□ -0.52
CLN3-231ENST00000568422 MRPS12O15235 138 aaKnown RBP11.83□□□□□ -0.52
CLN3-231ENST00000568422 CCNKO75909 580 aa11.83□□□□□ -0.52
CLN3-231ENST00000568422 CCL18P55774 89 aa11.83□□□□□ -0.52
CLN3-231ENST00000568422 FCN2Q15485 313 aa11.83□□□□□ -0.52
CLN3-231ENST00000568422 SCGB1D2O95969 90 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 NUDT3O95989 172 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 SLC38A11Q08AI6 406 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 BAK1Q16611 211 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 LINC00305Q7Z4B0 112 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 BPIFA4PQ86YQ2 179 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 ZBTB8BQ8NAP8 495 aaPredicted RBP11.82□□□□□ -0.52
CLN3-231ENST00000568422 ZNRF2Q8NHG8 242 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 TMEM263Q8WUH6 116 aaKnown RBP11.82□□□□□ -0.52
CLN3-231ENST00000568422 MITD1Q8WV92 249 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 ZNF331Q9NQX6 463 aaPredicted RBP11.82□□□□□ -0.52
CLN3-231ENST00000568422 NDUFA13Q9P0J0 144 aa11.82□□□□□ -0.52
CLN3-231ENST00000568422 NBDYA0A0U1RRE5 68 aa11.81□□□□□ -0.52
CLN3-231ENST00000568422 H7BYZ3 331 aa11.81□□□□□ -0.52
CLN3-231ENST00000568422 AGPAT2O15120 278 aa11.81□□□□□ -0.52
CLN3-231ENST00000568422 HTN1P15515 57 aa11.81□□□□□ -0.52
CLN3-231ENST00000568422 RNASE8Q8TDE3 154 aaKnown RBP11.81□□□□□ -0.52
CLN3-231ENST00000568422 GSKIPQ9P0R6 139 aa11.81□□□□□ -0.52
CLN3-231ENST00000568422 RCL1Q9Y2P8 373 aaKnown RBP11.81□□□□□ -0.52
CLN3-231ENST00000568422 RYR1P21817 5038 aa11.81□□□□□ -0.52
CLN3-231ENST00000568422 COX7A2P2O60397 106 aa11.8□□□□□ -0.52
CLN3-231ENST00000568422 OR10J6PQ8NGY7 276 aa11.8□□□□□ -0.52
CLN3-231ENST00000568422 BATF3Q9NR55 127 aa11.8□□□□□ -0.52
CLN3-231ENST00000568422 PXMP4Q9Y6I8 212 aa11.8□□□□□ -0.52
CLN3-231ENST00000568422 C7orf66A4D0T2 115 aa11.79□□□□□ -0.52
CLN3-231ENST00000568422 RAB31Q13636 194 aa11.79□□□□□ -0.52
CLN3-231ENST00000568422 C10orf113Q5VZT2 155 aa11.79□□□□□ -0.52
CLN3-231ENST00000568422 ZNF575Q86XF7 245 aa11.79□□□□□ -0.52
CLN3-231ENST00000568422 CCDC28AQ8IWP9 274 aa11.79□□□□□ -0.52
CLN3-231ENST00000568422 C6orf223Q8N319 242 aa11.79□□□□□ -0.52
CLN3-231ENST00000568422 NOP10Q9NPE3 64 aaKnown RBP11.79□□□□□ -0.52
CLN3-231ENST00000568422 MBPP02686 304 aaPredicted RBP11.78□□□□□ -0.52
CLN3-231ENST00000568422 BTCP35070 178 aa11.78□□□□□ -0.52
CLN3-231ENST00000568422 ARL16Q0P5N6 197 aa11.78□□□□□ -0.52
CLN3-231ENST00000568422 CLINT1Q14677 625 aa11.78□□□□□ -0.52
CLN3-231ENST00000568422 GUK1Q16774 197 aa11.78□□□□□ -0.52
CLN3-231ENST00000568422 RNF141Q8WVD5 230 aa11.78□□□□□ -0.52
CLN3-231ENST00000568422 TMEM37Q8WXS4 190 aa11.78□□□□□ -0.52
CLN3-231ENST00000568422 ZNF503Q96F45 646 aa11.78□□□□□ -0.52
CLN3-231ENST00000568422 LINC00588Q9Y4M8 146 aa11.78□□□□□ -0.52
CLN3-231ENST00000568422 LINC00854A0A1B0GVQ3 168 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 L7N2F9 121 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 VAMP2P63027 116 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 ZNF846Q147U1 533 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 Q6ZRG5 221 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 LINC00612Q8N6U2 182 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 ODF3Q96PU9 254 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 SDHCQ99643 169 aaPredicted RBP11.77□□□□□ -0.53
CLN3-231ENST00000568422 MGST2Q99735 147 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 DNAJC4Q9NNZ3 241 aa11.77□□□□□ -0.53
CLN3-231ENST00000568422 IGLC2P0DOY2 106 aa11.76□□□□□ -0.53
CLN3-231ENST00000568422 CAMLGP49069 296 aa11.76□□□□□ -0.53
CLN3-231ENST00000568422 TNP2Q05952 138 aa11.76□□□□□ -0.53
CLN3-231ENST00000568422 OPCMLQ14982 345 aa11.76□□□□□ -0.53
CLN3-231ENST00000568422 SSX7Q7RTT5 188 aa11.76□□□□□ -0.53
CLN3-231ENST00000568422 SAT2Q96F10 170 aaPredicted RBP11.76□□□□□ -0.53
CLN3-231ENST00000568422 H3BNG1 76 aa11.75□□□□□ -0.53
CLN3-231ENST00000568422 SLC17A3O00476 420 aa11.75□□□□□ -0.53
CLN3-231ENST00000568422 IL7P13232 177 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms