RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 RAB31Q13636 194 aa10.57□□□□□ -0.72
CLN3-222ENST00000566083 ZNF846Q147U1 533 aa10.57□□□□□ -0.72
CLN3-222ENST00000566083 SLC50A1Q9BRV3 221 aa10.57□□□□□ -0.72
CLN3-222ENST00000566083 PTTG2Q9NZH5 202 aa10.57□□□□□ -0.72
CLN3-222ENST00000566083 GSKIPQ9P0R6 139 aa10.57□□□□□ -0.72
CLN3-222ENST00000566083 ZNF705GA8MUZ8 300 aaPredicted RBP10.56□□□□□ -0.72
CLN3-222ENST00000566083 IGFL4Q6B9Z1 124 aa10.56□□□□□ -0.72
CLN3-222ENST00000566083 TMEM88Q6PEY1 159 aa10.56□□□□□ -0.72
CLN3-222ENST00000566083 ZNF493Q6ZR52 646 aa10.56□□□□□ -0.72
CLN3-222ENST00000566083 BPIFA4PQ86YQ2 179 aa10.56□□□□□ -0.72
CLN3-222ENST00000566083 ZBTB8BQ8NAP8 495 aaPredicted RBP10.56□□□□□ -0.72
CLN3-222ENST00000566083 UHRF2Q96PU4 802 aa10.56□□□□□ -0.72
CLN3-222ENST00000566083 LINC01587Q99440 93 aa10.56□□□□□ -0.72
CLN3-222ENST00000566083 C20orf144Q9BQM9 153 aa10.56□□□□□ -0.72
CLN3-222ENST00000566083 PLA2G2EQ9NZK7 142 aa10.56□□□□□ -0.72
CLN3-222ENST00000566083 A0A1B0GVY2 172 aa10.55□□□□□ -0.72
CLN3-222ENST00000566083 L7N2F9 121 aa10.55□□□□□ -0.72
CLN3-222ENST00000566083 MED14OSP0DP75 135 aa10.55□□□□□ -0.72
CLN3-222ENST00000566083 CDKN1BP46527 198 aa10.55□□□□□ -0.72
CLN3-222ENST00000566083 VAMP2P63027 116 aa10.55□□□□□ -0.72
CLN3-222ENST00000566083 Q6ZR54 194 aa10.55□□□□□ -0.72
CLN3-222ENST00000566083 LINC00305Q7Z4B0 112 aa10.55□□□□□ -0.72
CLN3-222ENST00000566083 RPUSD4Q96CM3 377 aaKnown RBP10.55□□□□□ -0.72
CLN3-222ENST00000566083 C16orf74Q96GX8 76 aa10.55□□□□□ -0.72
CLN3-222ENST00000566083 LINC00854A0A1B0GVQ3 168 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 C7orf66A4D0T2 115 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 AGPAT2O15120 278 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 RTL8CO15255 209 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 ATP5G1P05496 136 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 ATP5G3P48201 142 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 SLC38A11Q08AI6 406 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 Q6ZRG5 221 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 BAP18Q8IXM2 172 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 ATG101Q9BSB4 218 aa10.54□□□□□ -0.72
CLN3-222ENST00000566083 RCL1Q9Y2P8 373 aaKnown RBP10.54□□□□□ -0.72
CLN3-222ENST00000566083 CBY3A6NI87 242 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 H7BYZ3 331 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 COX7A2P2O60397 106 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 CCNKO75909 580 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 DEFB130BP0DP73 79 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 DEFB130AP0DP74 79 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 IL7P13232 177 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 BTCP35070 178 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 PATE2Q6UY27 113 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 ZNF331Q9NQX6 463 aaPredicted RBP10.53□□□□□ -0.72
CLN3-222ENST00000566083 TIMM8BQ9Y5J9 83 aaPredicted RBP10.53□□□□□ -0.72
CLN3-222ENST00000566083 PXMP4Q9Y6I8 212 aa10.53□□□□□ -0.72
CLN3-222ENST00000566083 KIAA1109Q2LD37 5005 aa10.52□□□□□ -0.72
CLN3-222ENST00000566083 IGLV2-18A0A075B6J9 118 aa10.52□□□□□ -0.73
CLN3-222ENST00000566083 TRAV12-2A0A075B6T6 113 aa10.52□□□□□ -0.73
CLN3-222ENST00000566083 MRPS12O15235 138 aaKnown RBP10.52□□□□□ -0.73
CLN3-222ENST00000566083 MBPP02686 304 aaPredicted RBP10.52□□□□□ -0.73
CLN3-222ENST00000566083 PVALBP20472 110 aaPredicted RBP10.52□□□□□ -0.73
CLN3-222ENST00000566083 GUK1Q16774 197 aa10.52□□□□□ -0.73
CLN3-222ENST00000566083 C1orf134Q5TEV5 83 aa10.52□□□□□ -0.73
CLN3-222ENST00000566083 C10orf113Q5VZT2 155 aa10.52□□□□□ -0.73
CLN3-222ENST00000566083 OR10J6PQ8NGY7 276 aa10.52□□□□□ -0.73
CLN3-222ENST00000566083 SDHCQ99643 169 aaPredicted RBP10.52□□□□□ -0.73
CLN3-222ENST00000566083 C20orf85Q9H1P6 137 aa10.52□□□□□ -0.73
CLN3-222ENST00000566083 F5H768 121 aa10.51□□□□□ -0.73
CLN3-222ENST00000566083 CCL18P55774 89 aa10.51□□□□□ -0.73
CLN3-222ENST00000566083 CCDC28AQ8IWP9 274 aa10.51□□□□□ -0.73
CLN3-222ENST00000566083 TMEM263Q8WUH6 116 aaKnown RBP10.51□□□□□ -0.73
CLN3-222ENST00000566083 PFDN5Q99471 154 aa10.51□□□□□ -0.73
CLN3-222ENST00000566083 DNAJC4Q9NNZ3 241 aa10.51□□□□□ -0.73
CLN3-222ENST00000566083 LYRM1O43325 122 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 HTN1P15515 57 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 CAMLGP49069 296 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 BCAP31P51572 246 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 C12orf45Q8N5I9 185 aaPredicted RBP10.5□□□□□ -0.73
CLN3-222ENST00000566083 OR1L4Q8NGR5 311 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 PLAC8L1A1L4L8 177 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 NACAE9PAV3 2078 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 TCRBP04435 133 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 AZU1P20160 251 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 CAV2P51636 162 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 TMEM37Q8WXS4 190 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 MGST2Q99735 147 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 UQCC1Q9NVA1 299 aa10.5□□□□□ -0.73
CLN3-222ENST00000566083 MUC4Q99102 2169 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 C5orf51A6NDU8 294 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 FAM25EA8MYX2 175 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 ZNF253O75346 499 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 S100A11P31949 105 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 HBG1P69891 147 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 HBG2P69892 147 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 ARL16Q0P5N6 197 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 RNASE8Q8TDE3 154 aaKnown RBP10.49□□□□□ -0.73
CLN3-222ENST00000566083 ZNF431Q8TF32 576 aaPredicted RBP10.49□□□□□ -0.73
CLN3-222ENST00000566083 C2orf50Q96LR7 162 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 ODF3Q96PU9 254 aa10.49□□□□□ -0.73
CLN3-222ENST00000566083 LSM5Q9Y4Y9 91 aaKnown RBP10.49□□□□□ -0.73
CLN3-222ENST00000566083 PLA2G10O15496 165 aa10.48□□□□□ -0.73
CLN3-222ENST00000566083 NUDT3O95989 172 aa10.48□□□□□ -0.73
CLN3-222ENST00000566083 PRM2P04554 102 aa10.48□□□□□ -0.73
CLN3-222ENST00000566083 IGLC2P0DOY2 106 aa10.48□□□□□ -0.73
CLN3-222ENST00000566083 LEPP41159 167 aa10.48□□□□□ -0.73
CLN3-222ENST00000566083 OPCMLQ14982 345 aa10.48□□□□□ -0.73
CLN3-222ENST00000566083 NRARPQ7Z6K4 114 aa10.48□□□□□ -0.73
CLN3-222ENST00000566083 STX12Q86Y82 276 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms