RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 M0R2Z0 102 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 GOSR2O14653 212 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 CST7O76096 145 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 DUSP14O95147 198 aaKnown RBP10.57□□□□□ -0.72
CLN3-213ENST00000565047 EMP1P54849 157 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 FGL1Q08830 312 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 RAB32Q13637 225 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 ZNF846Q147U1 533 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 OXA1LQ15070 435 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 SPINK13Q1W4C9 94 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 FAM222AQ5U5X8 452 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 OR8A1Q8NGG7 326 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 CHAC2Q8WUX2 184 aa10.57□□□□□ -0.72
CLN3-213ENST00000565047 SAT2Q96F10 170 aaPredicted RBP10.57□□□□□ -0.72
CLN3-213ENST00000565047 ZNF331Q9NQX6 463 aaPredicted RBP10.57□□□□□ -0.72
CLN3-213ENST00000565047 LYRM2Q9NU23 88 aaPredicted RBP10.57□□□□□ -0.72
CLN3-213ENST00000565047 LOC102723971A0A1B0GUV8 181 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 IGSF23A1L1A6 192 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 L7N2F9 121 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 HBE1P02100 147 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 IGLC2P0DOY2 106 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 CXCL2P19875 107 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 VAMP2P63027 116 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 OPCMLQ14982 345 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 NRARPQ7Z6K4 114 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 TMEM252Q8N6L7 170 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 ZNF738Q8NE65 137 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 S100ZQ8WXG8 99 aa10.56□□□□□ -0.72
CLN3-213ENST00000565047 YTHDF2Q9Y5A9 579 aaKnown RBP10.56□□□□□ -0.72
CLN3-213ENST00000565047 DYNC1H1Q14204 4646 aaKnown RBP10.56□□□□□ -0.72
CLN3-213ENST00000565047 H3BQ15 152 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 UPK1BO75841 260 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 CAMLGP49069 296 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 SULT1A1P50225 295 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 CAV2P51636 162 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 RRN3P1Q2M238 152 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 MIC13Q5XKP0 118 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 S100A7AQ86SG5 101 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 NIPSNAP3BQ9BS92 247 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 DNAJC4Q9NNZ3 241 aa10.55□□□□□ -0.72
CLN3-213ENST00000565047 PKD1P98161 4303 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 TEX48A0A1B0GUV7 120 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 PRAC2D3DTV9 90 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 SLC17A3O00476 420 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 SNRPCP09234 159 aaKnown RBP10.54□□□□□ -0.72
CLN3-213ENST00000565047 PRB4P10163 310 aaPredicted RBP10.54□□□□□ -0.72
CLN3-213ENST00000565047 S100A11P31949 105 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 RPL29P47914 159 aaKnown RBP10.54□□□□□ -0.72
CLN3-213ENST00000565047 BCAP31P51572 246 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 C10orf113Q5VZT2 155 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 MZT2BQ6NZ67 158 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 BAP18Q8IXM2 172 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 UQCC1Q9NVA1 299 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 RNF24Q9Y225 148 aa10.54□□□□□ -0.72
CLN3-213ENST00000565047 TRAV12-2A0A075B6T6 113 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 TRAV5A0A0B4J249 113 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 ZNF705GA8MUZ8 300 aaPredicted RBP10.53□□□□□ -0.72
CLN3-213ENST00000565047 BOLA2-SMG1P6H3BVE0 249 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 AZU1P20160 251 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 TSPOP30536 169 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 LCN15Q6UWW0 184 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 BPIFA4PQ86YQ2 179 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 RPUSD4Q96CM3 377 aaKnown RBP10.53□□□□□ -0.72
CLN3-213ENST00000565047 FAM210BQ96KR6 192 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 NDUFAF3Q9BU61 184 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 KIAA1109Q2LD37 5005 aa10.53□□□□□ -0.72
CLN3-213ENST00000565047 H0YIZ8 118 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 COX7A2P2O60397 106 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 INSP01308 110 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 PVALBP20472 110 aaPredicted RBP10.52□□□□□ -0.73
CLN3-213ENST00000565047 S100A10P60903 97 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 B2MP61769 119 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 HIST1H1AQ02539 215 aaPredicted RBP10.52□□□□□ -0.73
CLN3-213ENST00000565047 KIR3DS1Q14943 382 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 SLC50A1Q9BRV3 221 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 PKHD1P08F94 4074 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 DNAH11Q96DT5 4516 aa10.52□□□□□ -0.73
CLN3-213ENST00000565047 H3BTX0 84 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 SIX6O95475 246 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 RAB31Q13636 194 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 ATP6V1FQ16864 119 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 Q6ZRG5 221 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 POM121L12Q8N7R1 296 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 SLC39A9Q9NUM3 307 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 ZNF586Q9NXT0 402 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 PTTG2Q9NZH5 202 aa10.51□□□□□ -0.73
CLN3-213ENST00000565047 UBE2L5PA0A1B0GUS4 154 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 LYRM9A8MSI8 78 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 P0DMU3 169 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 FAM231AP0DMU4 169 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 FAM231CP0DMU5 169 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 CDKN1BP46527 198 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 NHLH2Q02577 135 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 OR1L4Q8NGR5 311 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 LRRC20Q8TCA0 184 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 MARVELD1Q9BSK0 173 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 TMEM208Q9BTX3 173 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 NMES1Q9C002 83 aa10.5□□□□□ -0.73
CLN3-213ENST00000565047 ZNF253O75346 499 aa10.49□□□□□ -0.73
CLN3-213ENST00000565047 NDUFB4O95168 129 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms