RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 TM4SF20Q53R12 229 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 AWAT1Q58HT5 328 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 CYB561D1Q8N8Q1 229 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 OR9G4Q8NGQ1 327 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 RPUSD4Q96CM3 377 aaKnown RBP10.59□□□□□ -0.71
CLK3-209ENST00000562670 SLC50A1Q9BRV3 221 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 RHPN1-AS1Q9BWJ2 59 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 CLEC5AQ9NY25 188 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 CARHSP1Q9Y2V2 147 aaKnown RBP10.59□□□□□ -0.71
CLK3-209ENST00000562670 SMAD5-AS1Q9Y6J3 95 aa10.59□□□□□ -0.71
CLK3-209ENST00000562670 PSG9Q00887 426 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 FAM90A2PQ658T7 463 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 C11orf44Q8N8P7 122 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 C5orf17Q8NAS9 161 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 BLNKQ8WV28 456 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 C17orf77Q96MU5 243 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 CITED1Q99966 193 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 Q9H3A6 140 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 SIGLEC8Q9NYZ4 499 aa10.58□□□□□ -0.72
CLK3-209ENST00000562670 TEP1Q99973 2627 aaKnown RBP10.57□□□□□ -0.72
CLK3-209ENST00000562670 M0QZ24 198 aa10.57□□□□□ -0.72
CLK3-209ENST00000562670 ADCYAP1P18509 176 aa10.57□□□□□ -0.72
CLK3-209ENST00000562670 FAM74A3Q4VXF1 159 aa10.57□□□□□ -0.72
CLK3-209ENST00000562670 SOHLH1Q5JUK2 328 aa10.57□□□□□ -0.72
CLK3-209ENST00000562670 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.57□□□□□ -0.72
CLK3-209ENST00000562670 HIST1H2BAQ96A08 127 aa10.57□□□□□ -0.72
CLK3-209ENST00000562670 MRPL53Q96EL3 112 aaKnown RBP10.57□□□□□ -0.72
CLK3-209ENST00000562670 LINC00052Q96N35 136 aa10.57□□□□□ -0.72
CLK3-209ENST00000562670 ZNF331Q9NQX6 463 aaPredicted RBP10.57□□□□□ -0.72
CLK3-209ENST00000562670 SETD2Q9BYW2 2564 aaPredicted RBP10.57□□□□□ -0.72
CLK3-209ENST00000562670 IGHV3-49A0A0A0MS15 119 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 A0A1W2PRX2 142 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 SLC17A3O00476 420 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 CBLN1P23435 193 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 RANP62826 216 aaKnown RBP10.56□□□□□ -0.72
CLK3-209ENST00000562670 SUMO1P63165 101 aaKnown RBP10.56□□□□□ -0.72
CLK3-209ENST00000562670 KRTAP24-1Q3LI83 254 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 C2CD4CQ8TF44 421 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 DLX4Q92988 240 aaPredicted RBP10.56□□□□□ -0.72
CLK3-209ENST00000562670 AAMDCQ9H7C9 122 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 PRELID1Q9Y255 219 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 JMJD1CQ15652 2540 aa10.56□□□□□ -0.72
CLK3-209ENST00000562670 IGHV3OR16-13A0A075B7E8 117 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 IGHV3-74A0A0B4J1X5 117 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 IGHV3-66A0A0C4DH42 116 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 SERTM2A0A1B0GWG4 89 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 SCO2A0A1W2PP80 73 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 ZNF785A8K8V0 405 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 F8W036 122 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 FOLR2P14207 255 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 PRIMA1Q86XR5 153 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 ATG101Q9BSB4 218 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 NRN1Q9NPD7 142 aa10.55□□□□□ -0.72
CLK3-209ENST00000562670 TRAV2A0A0B4J234 112 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 PGPA6NDG6 321 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 PEX7O00628 323 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 SOCS3O14543 225 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 OVOL1O14753 267 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 CSN3P07498 182 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 ADAMTSL5Q6ZMM2 481 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 TCF24Q7RTU0 167 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 DUX3Q96PT4 197 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 PARLQ9H300 379 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 EPDR1Q9UM22 224 aa10.54□□□□□ -0.72
CLK3-209ENST00000562670 C9JCJ5 164 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 H3BTX0 84 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 ISLRO14498 428 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 TCRAP04437 139 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 SLC25A5P05141 298 aaKnown RBP10.53□□□□□ -0.72
CLK3-209ENST00000562670 S100A9P06702 114 aaKnown RBP10.53□□□□□ -0.72
CLK3-209ENST00000562670 NSUN5P1Q3KNT7 163 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 SVBPQ8N300 66 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 CMTM2Q8TAZ6 248 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 SMIM7Q9BQ49 75 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 NIPSNAP3BQ9BS92 247 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 MLXQ9UH92 298 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 KLF12Q9Y4X4 402 aa10.53□□□□□ -0.72
CLK3-209ENST00000562670 TRBV6-1A0A0K0K1D8 114 aa10.52□□□□□ -0.73
CLK3-209ENST00000562670 FBLL1A6NHQ2 334 aaKnown RBP10.52□□□□□ -0.73
CLK3-209ENST00000562670 SNRPCP09234 159 aaKnown RBP10.52□□□□□ -0.73
CLK3-209ENST00000562670 EDN2P20800 178 aa10.52□□□□□ -0.73
CLK3-209ENST00000562670 TAS2R60P59551 318 aa10.52□□□□□ -0.73
CLK3-209ENST00000562670 PNRC1Q12796 327 aaPredicted RBP10.52□□□□□ -0.73
CLK3-209ENST00000562670 HIST2H2BDQ6DRA6 164 aa10.52□□□□□ -0.73
CLK3-209ENST00000562670 EXOC3-AS1Q8N2X6 119 aa10.52□□□□□ -0.73
CLK3-209ENST00000562670 LY96Q9Y6Y9 160 aa10.52□□□□□ -0.73
CLK3-209ENST00000562670 TRAV8-2A0A0B4J237 113 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 TRAV25A0A0B4J276 109 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 ZNF727A8MUV8 499 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 AKR1C3P42330 323 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 RPL35P42766 123 aaKnown RBP10.51□□□□□ -0.73
CLK3-209ENST00000562670 CSN1S1P47710 185 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 CNN1P51911 297 aaKnown RBP10.51□□□□□ -0.73
CLK3-209ENST00000562670 TMEM75Q8N9X5 138 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 DCANP1Q8TF63 244 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 SMIM12Q96EX1 92 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 FMC1Q96HJ9 113 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 ZNF747Q9BV97 191 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 NAT8Q9UHE5 227 aa10.51□□□□□ -0.73
CLK3-209ENST00000562670 ATRQ13535 2644 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms