RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 FXYD5Q96DB9 178 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 SAT2Q96F10 170 aaPredicted RBP7.21□□□□□ -1.26
CLK3-208ENST00000562626 LINC00052Q96N35 136 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 GPR82Q96P67 336 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 B9D2Q9BPU9 175 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 FAM110AQ9BQ89 295 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 RETNQ9HD89 108 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 KCNIP2Q9NS61 270 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 RPRMQ9NS64 109 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 PFDN2Q9UHV9 154 aa7.21□□□□□ -1.26
CLK3-208ENST00000562626 BORCS7-ASMTA0A0B4J1R7 106 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 PRAC2D3DTV9 90 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 TAAR5O14804 337 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 OR10J4P0C629 311 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 ZNF705DP0CH99 300 aaPredicted RBP7.2□□□□□ -1.26
CLK3-208ENST00000562626 ZNF705BP0CI00 300 aaPredicted RBP7.2□□□□□ -1.26
CLK3-208ENST00000562626 SPP1P10451 314 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 M6PRP20645 277 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 PSMB3P49720 205 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 BPIFA4PQ86YQ2 179 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 OR10G4Q8NGN3 311 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 OR10G9Q8NGN4 311 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 OR10G7Q8NGN6 311 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 C16orf92Q96LL3 132 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 ZNF471Q9BX82 626 aaPredicted RBP7.2□□□□□ -1.26
CLK3-208ENST00000562626 MRPL32Q9BYC8 188 aaKnown RBP7.2□□□□□ -1.26
CLK3-208ENST00000562626 TUBA4BQ9H853 241 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 TMEM14CQ9P0S9 112 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 BOLA1Q9Y3E2 137 aa7.2□□□□□ -1.26
CLK3-208ENST00000562626 EPPK1P58107 5090 aaKnown RBP7.19□□□□□ -1.26
CLK3-208ENST00000562626 KANTRA0A1W2PQU2 76 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 ZNF705FA8MVS1 300 aaPredicted RBP7.19□□□□□ -1.26
CLK3-208ENST00000562626 ISLRO14498 428 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 JTBO76095 146 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 GIG44P09565 113 aaPredicted RBP7.19□□□□□ -1.26
CLK3-208ENST00000562626 C4BPBP20851 252 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 FHITP49789 147 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 RHOBP62745 196 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 ACOT6Q3I5F7 207 aaPredicted RBP7.19□□□□□ -1.26
CLK3-208ENST00000562626 ACTL10Q5JWF8 245 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 TRPT1Q86TN4 253 aaKnown RBP7.19□□□□□ -1.26
CLK3-208ENST00000562626 EXOC3-AS1Q8N2X6 119 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 BLNKQ8WV28 456 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 RAB24Q969Q5 203 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 PHYHIPLQ96FC7 376 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 HYLS1Q96M11 299 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 HRH4Q9H3N8 390 aa7.19□□□□□ -1.26
CLK3-208ENST00000562626 ZNF331Q9NQX6 463 aaPredicted RBP7.19□□□□□ -1.26
CLK3-208ENST00000562626 TRBV19A0A075B6N1 114 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 M0R3E3 92 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 PFDN1O60925 122 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 HIST1H1EP10412 219 aaKnown RBP7.18□□□□□ -1.26
CLK3-208ENST00000562626 CDC34P49427 236 aaPredicted RBP7.18□□□□□ -1.26
CLK3-208ENST00000562626 MEOX2P50222 304 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 SERF2P84101 59 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 ZFP69Q49AA0 526 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 TMEM41BQ5BJD5 291 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 LCN15Q6UWW0 184 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 GNPNAT1Q96EK6 184 aaPredicted RBP7.18□□□□□ -1.26
CLK3-208ENST00000562626 TM2D3Q9BRN9 247 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 PAXXQ9BUH6 204 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 OR51M1Q9H341 326 aa7.18□□□□□ -1.26
CLK3-208ENST00000562626 SAV1Q9H4B6 383 aaPredicted RBP7.18□□□□□ -1.26
CLK3-208ENST00000562626 LOC102724200A0A096LPH7 203 aaPredicted RBP7.17□□□□□ -1.26
CLK3-208ENST00000562626 A0A0J9YX75 114 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 H3BMM0 161 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 BOLA2-SMG1P6H3BVE0 249 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 OR7C2O60412 319 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 IGKV3-20P01619 116 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 STAG3L2P0CL84 134 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 STAG3L3P0CL85 134 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 ARL14EPLP0DKL9 152 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 HLA-DRB4P13762 266 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 S100A7P31151 101 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 ID1P41134 155 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 FXYD7P58549 80 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 SNRPD3P62318 126 aaKnown RBP7.17□□□□□ -1.26
CLK3-208ENST00000562626 PSG3Q16557 428 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 STOML3Q8TAV4 291 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 RNF141Q8WVD5 230 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 TMED6Q8WW62 240 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 TMPRSS5Q9H3S3 457 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 HLA-DRB4X5D2U9 266 aa7.17□□□□□ -1.26
CLK3-208ENST00000562626 A0A1W2PPV4 95 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 NBEAP1P0C6P0 100 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 FGF8P55075 233 aaPredicted RBP7.16□□□□□ -1.26
CLK3-208ENST00000562626 CMC4P56277 68 aaPredicted RBP7.16□□□□□ -1.26
CLK3-208ENST00000562626 UBE2L3P68036 154 aaKnown RBP7.16□□□□□ -1.26
CLK3-208ENST00000562626 KHDC3LQ587J8 217 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 AMTNQ6UX39 209 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 FOXI2Q6ZQN5 318 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 S100A7AQ86SG5 101 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 BAP18Q8IXM2 172 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 ZNF738Q8NE65 137 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 SLC50A1Q9BRV3 221 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 SLC35B3Q9H1N7 401 aa7.16□□□□□ -1.26
CLK3-208ENST00000562626 DNAH7Q8WXX0 4024 aa7.15□□□□□ -1.26
CLK3-208ENST00000562626 CTXND1A0A1B0GTU2 59 aa7.15□□□□□ -1.26
CLK3-208ENST00000562626 A8MTW9 85 aa7.15□□□□□ -1.26
CLK3-208ENST00000562626 SEC11BP0C7V7 166 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms