RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 ARL3P36405 182 aa8.66□□□□□ -1.02
USP3-218ENST00000560202 C1orf194Q5T5A4 169 aa8.66□□□□□ -1.02
USP3-218ENST00000560202 LINC00305Q7Z4B0 112 aa8.66□□□□□ -1.02
USP3-218ENST00000560202 RNF125Q96EQ8 232 aa8.66□□□□□ -1.02
USP3-218ENST00000560202 ZNF414Q96IQ9 312 aa8.66□□□□□ -1.02
USP3-218ENST00000560202 UHRF2Q96PU4 802 aa8.66□□□□□ -1.02
USP3-218ENST00000560202 MRPL32Q9BYC8 188 aaKnown RBP8.66□□□□□ -1.02
USP3-218ENST00000560202 MRPL27Q9P0M9 148 aaKnown RBP8.66□□□□□ -1.02
USP3-218ENST00000560202 F8P00451 2351 aa8.66□□□□□ -1.02
USP3-218ENST00000560202 DLEU1O43261 78 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 RANP62826 216 aaKnown RBP8.65□□□□□ -1.02
USP3-218ENST00000560202 MORN5Q5VZ52 161 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 WIPF2Q8TF74 440 aaPredicted RBP8.65□□□□□ -1.02
USP3-218ENST00000560202 UBE2E2Q96LR5 201 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 OR5B12Q96R08 314 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 IMMP2LQ96T52 175 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 SDF2L1Q9HCN8 221 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 TECRQ9NZ01 308 aaKnown RBP8.65□□□□□ -1.02
USP3-218ENST00000560202 PEF1Q9UBV8 284 aaKnown RBP8.65□□□□□ -1.02
USP3-218ENST00000560202 HIGD1AQ9Y241 93 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 GOLT1BQ9Y3E0 138 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 URGCP-MRPS24S4R325 110 aa8.65□□□□□ -1.02
USP3-218ENST00000560202 TRAV5A0A0B4J249 113 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 KIR2DL5BA0A0G2JN68 375 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 KIR2DL5BA0A0G2JPC4 375 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 C8orf88P0DMB2 117 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 TAS2R45P59539 299 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 SRSF2Q01130 221 aaKnown RBP8.65□□□□□ -1.03
USP3-218ENST00000560202 TCTEX1D4Q5JR98 221 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 TOMM20LQ6UXN7 152 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 KIR2DL5AQ8N109 375 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 OR4F5Q8NH21 305 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 NF1P21359 2839 aa8.65□□□□□ -1.03
USP3-218ENST00000560202 BMPR1BO00238 502 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 CXorf1O96002 111 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 TYMSP04818 313 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 LGALS1P09382 135 aaKnown RBP8.64□□□□□ -1.03
USP3-218ENST00000560202 ARL14EPLP0DKL9 152 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 BCL2P10415 239 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 PDZD11Q5EBL8 140 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 FAM90A2PQ658T7 463 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 ANAPC16Q96DE5 110 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 SNHG12Q9BXW3 62 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 SLC25A39Q9BZJ4 359 aaPredicted RBP8.64□□□□□ -1.03
USP3-218ENST00000560202 ZFAND3Q9H8U3 227 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 NAT8Q9UHE5 227 aa8.64□□□□□ -1.03
USP3-218ENST00000560202 XKRY2A2RUG3 117 aa8.63□□□□□ -1.03
USP3-218ENST00000560202 TMEM241Q24JQ0 296 aa8.63□□□□□ -1.03
USP3-218ENST00000560202 S100A7AQ86SG5 101 aa8.63□□□□□ -1.03
USP3-218ENST00000560202 FAM167A-AS1Q96KT0 104 aa8.63□□□□□ -1.03
USP3-218ENST00000560202 SLC25A2Q9BXI2 301 aa8.63□□□□□ -1.03
USP3-218ENST00000560202 GNG13Q9P2W3 67 aa8.63□□□□□ -1.03
USP3-218ENST00000560202 RABAC1Q9UI14 185 aa8.63□□□□□ -1.03
USP3-218ENST00000560202 RNF114Q9Y508 228 aa8.63□□□□□ -1.03
USP3-218ENST00000560202 IGHV3OR16-8A0A075B7F1 116 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 CLPSL1A2RUU4 121 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 ZNF705GA8MUZ8 300 aaPredicted RBP8.62□□□□□ -1.03
USP3-218ENST00000560202 H3BRN7 92 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 NDUFA4O00483 81 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 EREGO14944 169 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 OR7C2O60412 319 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 PFN1P07737 140 aaKnown RBP8.62□□□□□ -1.03
USP3-218ENST00000560202 GCHFRP30047 84 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 PSMB3P49720 205 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 LEMD1Q68G75 181 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 PQLC2Q6ZP29 291 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 ZNF503Q96F45 646 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 SHANK2-AS3Q9BTD1 123 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 TMEM250H0YL14 139 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 SNRPCP09234 159 aaKnown RBP8.62□□□□□ -1.03
USP3-218ENST00000560202 ZNF25P17030 456 aaPredicted RBP8.62□□□□□ -1.03
USP3-218ENST00000560202 PROK1P58294 105 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 KHDC1LQ5JSQ8 128 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 STXBP6Q8NFX7 210 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 C20orf144Q9BQM9 153 aa8.62□□□□□ -1.03
USP3-218ENST00000560202 CD28P10747 220 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 S100A7P31151 101 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 ACTL10Q5JWF8 245 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 UNQ9165/PRO28630Q6UXU0 137 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 C18orf65Q6ZTR6 163 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 C4orf3Q8WVX3 66 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 WFDC12Q8WWY7 111 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 TMEM208Q9BTX3 173 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 PAXXQ9BUH6 204 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 MANBALQ9NQG1 85 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 TMEM167BQ9NRX6 74 aa8.61□□□□□ -1.03
USP3-218ENST00000560202 OR10J4P0C629 311 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 PYYP10082 97 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 PCP4P48539 62 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 CEBPGP53567 150 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 UBE2L3P68036 154 aaKnown RBP8.6□□□□□ -1.03
USP3-218ENST00000560202 RPEL1Q2QD12 228 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 FAM106AQ4KMX7 169 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 KCNIP4Q6PIL6 250 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 GPHB5Q86YW7 130 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 GBGT1Q8N5D6 347 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 C11orf44Q8N8P7 122 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 TMEM190Q8WZ59 177 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 METTL26Q96S19 204 aa8.6□□□□□ -1.03
USP3-218ENST00000560202 IGHV4OR15-8A0A075B7B6 117 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 143.7 ms