RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MCFD2Q8NI22 146 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 DEDD2Q8WXF8 326 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 Q9H8V8 135 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 LINC00588Q9Y4M8 146 aa6.42□□□□□ -1.38
HDDC3-204ENST00000559834 A0A087X0K7 114 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 PLAC8L1A1L4L8 177 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 H7BYZ3 331 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 LINC00869P0C866 280 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 ID3Q02535 119 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 OR5I1Q13606 314 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 RGS21Q2M5E4 152 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 PYDC2Q56P42 97 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 TTC32Q5I0X7 151 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 CCDC28AQ8IWP9 274 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 TMEM263Q8WUH6 116 aaKnown RBP6.41□□□□□ -1.38
HDDC3-204ENST00000559834 RNF141Q8WVD5 230 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 RPUSD4Q96CM3 377 aaKnown RBP6.41□□□□□ -1.38
HDDC3-204ENST00000559834 GNPNAT1Q96EK6 184 aaPredicted RBP6.41□□□□□ -1.38
HDDC3-204ENST00000559834 ZNF503Q96F45 646 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 C20orf144Q9BQM9 153 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 NPVFQ9HCQ7 196 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 NOP10Q9NPE3 64 aaKnown RBP6.41□□□□□ -1.38
HDDC3-204ENST00000559834 PSENENQ9NZ42 101 aa6.41□□□□□ -1.38
HDDC3-204ENST00000559834 H3BP45 60 aa6.4□□□□□ -1.38
HDDC3-204ENST00000559834 CXCL2P19875 107 aa6.4□□□□□ -1.38
HDDC3-204ENST00000559834 BTF3P20290 206 aaKnown RBP6.4□□□□□ -1.38
HDDC3-204ENST00000559834 UBE2MP61081 183 aaKnown RBP6.4□□□□□ -1.38
HDDC3-204ENST00000559834 DLK1P80370 383 aa6.4□□□□□ -1.38
HDDC3-204ENST00000559834 PPP1R1AQ13522 171 aa6.4□□□□□ -1.38
HDDC3-204ENST00000559834 PXDC1Q5TGL8 231 aa6.4□□□□□ -1.38
HDDC3-204ENST00000559834 OR10P1Q8NGE3 313 aa6.4□□□□□ -1.38
HDDC3-204ENST00000559834 SMIM8Q96KF7 97 aa6.4□□□□□ -1.38
HDDC3-204ENST00000559834 A0A1W2PPQ1 181 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 FNDC10F2Z333 226 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 GOSR2O14653 212 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 RLN2P04090 185 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 M6PRP20645 277 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 BCAP31P51572 246 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 POLR2GP62487 172 aaKnown RBP eCLIP6.39□□□□□ -1.39
HDDC3-204ENST00000559834 IFITM3Q01628 133 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 TEPPQ6URK8 271 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 LCN15Q6UWW0 184 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 SPATA12Q7Z6I5 190 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 Q8N1X5 172 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 RNASE8Q8TDE3 154 aaKnown RBP6.39□□□□□ -1.39
HDDC3-204ENST00000559834 RXFP4Q8TDU9 374 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 UHRF2Q96PU4 802 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 SLC50A1Q9BRV3 221 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 ARL6Q9H0F7 186 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 ARV1Q9H2C2 271 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 MGAT4CQ9UBM8 478 aa6.39□□□□□ -1.39
HDDC3-204ENST00000559834 TRAV26-1A0A087WT03 109 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 PMS2P5A8MQ11 134 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 H3BNG1 76 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 K7EPK0 472 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 S100A5P33763 92 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 RRAS2P62070 204 aaPredicted RBP6.38□□□□□ -1.39
HDDC3-204ENST00000559834 C4orf46Q504U0 113 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 CCDC190Q86UF4 302 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 BPIFA4PQ86YQ2 179 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 TRIM63Q969Q1 353 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 Q9H3A6 140 aa6.38□□□□□ -1.39
HDDC3-204ENST00000559834 ZNF331Q9NQX6 463 aaPredicted RBP6.38□□□□□ -1.39
HDDC3-204ENST00000559834 A0A0J9YY99 117 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 GAGE12BA1L429 117 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 C9orf170A2RU37 121 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 SNURFLB1AK76 121 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 SSSCA1O60232 199 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 UPK1BO75841 260 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 GAGE7O76087 117 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 METTL15P1P0C7V9 234 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 GAGE12FP0CL80 117 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 GAGE12GP0CL81 117 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 GAGE12IP0CL82 117 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 TAS2R30P59541 319 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 TMEM14EPQ6UXP3 125 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 PATE2Q6UY27 113 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 LINC00305Q7Z4B0 112 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 ZNF546Q86UE3 836 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 LINC00612Q8N6U2 182 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 UPK3BQ9BT76 320 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 GGACTQ9BVM4 153 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 SCRT2Q9NQ03 307 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 FAT2Q9NYQ8 4349 aa6.37□□□□□ -1.39
HDDC3-204ENST00000559834 NAP1L6A6NFF2 107 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 MRPS12O15235 138 aaKnown RBP6.36□□□□□ -1.39
HDDC3-204ENST00000559834 TSC22D2O75157 780 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 LEPP41159 167 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 INPP1P49441 399 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 SLC38A11Q08AI6 406 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 RAB31Q13636 194 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 ESRGQ1W209 222 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 PYGO2Q9BRQ0 406 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 MRPS16Q9Y3D3 137 aaKnown RBP6.36□□□□□ -1.39
HDDC3-204ENST00000559834 PXMP4Q9Y6I8 212 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 PKHD1P08F94 4074 aa6.36□□□□□ -1.39
HDDC3-204ENST00000559834 DNAH2Q9P225 4427 aa6.35□□□□□ -1.39
HDDC3-204ENST00000559834 AGPAT2O15120 278 aa6.35□□□□□ -1.39
HDDC3-204ENST00000559834 COX7A2P2O60397 106 aa6.35□□□□□ -1.39
HDDC3-204ENST00000559834 SCGB1D2O95969 90 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms