RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 GUCA2BQ16661 112 aa13.14□□□□□ -0.31
CHRNA3-206ENST00000559658 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.14□□□□□ -0.31
CHRNA3-206ENST00000559658 SIGLEC15Q6ZMC9 328 aa13.14□□□□□ -0.31
CHRNA3-206ENST00000559658 DPF1Q92782 380 aa13.14□□□□□ -0.31
CHRNA3-206ENST00000559658 RPUSD4Q96CM3 377 aaKnown RBP13.14□□□□□ -0.31
CHRNA3-206ENST00000559658 SMPXQ9UHP9 88 aa13.14□□□□□ -0.31
CHRNA3-206ENST00000559658 F8W036 122 aa13.14□□□□□ -0.31
CHRNA3-206ENST00000559658 UFC1Q9Y3C8 167 aa13.14□□□□□ -0.31
CHRNA3-206ENST00000559658 IGKV3-7A0A075B6H7 116 aa13.13□□□□□ -0.31
CHRNA3-206ENST00000559658 CCL24O00175 119 aa13.13□□□□□ -0.31
CHRNA3-206ENST00000559658 LGALS9O00182 355 aa13.13□□□□□ -0.31
CHRNA3-206ENST00000559658 AWAT1Q58HT5 328 aa13.13□□□□□ -0.31
CHRNA3-206ENST00000559658 RPH3ALQ9UNE2 315 aa13.13□□□□□ -0.31
CHRNA3-206ENST00000559658 PGPA6NDG6 321 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 C2orf70A6NJV1 201 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 K7EMT4 169 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 M0R3E3 92 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 ATF4P18848 351 aaPredicted RBP13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 ZNF674Q2M3X9 581 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 C1orf194Q5T5A4 169 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 S100A7AQ86SG5 101 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 ARL2-SNX15V9GYD0 113 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 KRBOX1C9JBD0 128 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 S100A1P23297 94 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 C10orf91Q5T1B1 145 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 RNF182Q8N6D2 247 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 LINC00479Q96M42 142 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 PARLQ9H300 379 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 SMDT1Q9H4I9 107 aa13.12□□□□□ -0.31
CHRNA3-206ENST00000559658 APOC3P02656 99 aa13.11□□□□□ -0.31
CHRNA3-206ENST00000559658 TAGLN2P37802 199 aaKnown RBP13.11□□□□□ -0.31
CHRNA3-206ENST00000559658 SOHLH1Q5JUK2 328 aa13.11□□□□□ -0.31
CHRNA3-206ENST00000559658 MLXQ9UH92 298 aa13.11□□□□□ -0.31
CHRNA3-206ENST00000559658 TRBV20OR9-2A0A075B6H5 130 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 A0A087X0K7 114 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 ZNF785A8K8V0 405 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 FOLR2P14207 255 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 CBLN1P23435 193 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 GALR1P47211 349 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 FOXL1Q12952 345 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 OR9G4Q8NGQ1 327 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 SGK494Q96LW2 274 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 SEC11CQ9BY50 192 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 TRAV8-2A0A0B4J237 113 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 PGPEP1LA6NFU8 196 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 TMEM250H0YL14 139 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 PDE6DO43924 150 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 SLC25A5P05141 298 aaKnown RBP13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 ATRAIDQ6UW56 229 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 C11orf52Q96A22 123 aa13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 CARHSP1Q9Y2V2 147 aaKnown RBP13.1□□□□□ -0.31
CHRNA3-206ENST00000559658 A0A1B0GUS0 222 aa13.09□□□□□ -0.31
CHRNA3-206ENST00000559658 SPATA3Q8NHX4 192 aa13.09□□□□□ -0.31
CHRNA3-206ENST00000559658 C2CD4CQ8TF44 421 aa13.09□□□□□ -0.31
CHRNA3-206ENST00000559658 ZNF331Q9NQX6 463 aaPredicted RBP13.09□□□□□ -0.31
CHRNA3-206ENST00000559658 OTORQ9NRC9 128 aa13.09□□□□□ -0.31
CHRNA3-206ENST00000559658 TRAV34A0A0B4J273 112 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 ZNF705FA8MVS1 300 aaPredicted RBP13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 F6UZH7 168 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 RPL11P62913 178 aaKnown RBP13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 TCF24Q7RTU0 167 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 NDUFA11Q86Y39 141 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 GBGT1Q8N5D6 347 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 GPR82Q96P67 336 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 ASCL2Q99929 193 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 STAB1Q9NY15 2570 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 A0A1W2PS18 150 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 PEX7O00628 323 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 CSN3P07498 182 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 S100A7P31151 101 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 PDE6HQ13956 83 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 GRAMD2BQ96HH9 432 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 C20orf173Q96LM9 149 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 SMIM7Q9BQ49 75 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 TXNDC17Q9BRA2 123 aa13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 AURKAIP1Q9NWT8 199 aaPredicted RBP13.08□□□□□ -0.32
CHRNA3-206ENST00000559658 TRAV8-1A0A0A6YYK1 113 aa13.07□□□□□ -0.32
CHRNA3-206ENST00000559658 ZNF727A8MUV8 499 aa13.07□□□□□ -0.32
CHRNA3-206ENST00000559658 SOCS3O14543 225 aa13.07□□□□□ -0.32
CHRNA3-206ENST00000559658 SCO1O75880 301 aa13.07□□□□□ -0.32
CHRNA3-206ENST00000559658 RPL35P42766 123 aaKnown RBP13.07□□□□□ -0.32
CHRNA3-206ENST00000559658 CITED1Q99966 193 aa13.07□□□□□ -0.32
CHRNA3-206ENST00000559658 EPDR1Q9UM22 224 aa13.07□□□□□ -0.32
CHRNA3-206ENST00000559658 DEFB1P60022 68 aa13.06□□□□□ -0.32
CHRNA3-206ENST00000559658 C5orf17Q8NAS9 161 aa13.06□□□□□ -0.32
CHRNA3-206ENST00000559658 RNF24Q9Y225 148 aa13.06□□□□□ -0.32
CHRNA3-206ENST00000559658 PRAC2D3DTV9 90 aa13.06□□□□□ -0.32
CHRNA3-206ENST00000559658 TCRAP04437 139 aa13.06□□□□□ -0.32
CHRNA3-206ENST00000559658 FAM24BQ8N5W8 94 aa13.06□□□□□ -0.32
CHRNA3-206ENST00000559658 ISLRO14498 428 aa13.05□□□□□ -0.32
CHRNA3-206ENST00000559658 TFPI2P48307 235 aa13.05□□□□□ -0.32
CHRNA3-206ENST00000559658 GOLT1AQ6ZVE7 132 aa13.05□□□□□ -0.32
CHRNA3-206ENST00000559658 NKX6-2Q9C056 277 aaPredicted RBP13.05□□□□□ -0.32
CHRNA3-206ENST00000559658 NRN1Q9NPD7 142 aa13.05□□□□□ -0.32
CHRNA3-206ENST00000559658 TRRAPQ9Y4A5 3859 aa13.05□□□□□ -0.32
CHRNA3-206ENST00000559658 IGKV2-40A0A087WW87 121 aaPredicted RBP13.04□□□□□ -0.32
CHRNA3-206ENST00000559658 OVOL1O14753 267 aa13.04□□□□□ -0.32
CHRNA3-206ENST00000559658 ZNF253O75346 499 aa13.04□□□□□ -0.32
CHRNA3-206ENST00000559658 IGKV2D-40P01614 121 aaPredicted RBP13.04□□□□□ -0.32
CHRNA3-206ENST00000559658 AKR1C3P42330 323 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms