RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 C5orf67F2Z3F1 127 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 H0YJX3 145 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 M0R233 179 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 GEMIN2O14893 280 aaKnown RBP0.49□□□□□ -2.33
USP3-209ENST00000558925 CCL25O15444 150 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 DNAL4O96015 105 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 IFNA21P01568 189 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 IFNA14P01570 189 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 ANGP03950 147 aaKnown RBP0.49□□□□□ -2.33
USP3-209ENST00000558925 HBBP68871 147 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 IFT20Q8IY31 132 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 FAM19A2Q8N3H0 131 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 ST6GALNAC3Q8NDV1 305 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 OR5D16Q8NGK9 328 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 GRPEL2Q8TAA5 225 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 PATE1Q8WXA2 126 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 RAB37Q96AX2 223 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 BORCS8Q96FH0 119 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 ODF3Q96PU9 254 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 TMEM70Q9BUB7 260 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 LRTM1Q9HBL6 345 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 MRPL40Q9NQ50 206 aaKnown RBP0.49□□□□□ -2.33
USP3-209ENST00000558925 NIT2Q9NQR4 276 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 NAT8BQ9UHF3 227 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 C22orf24Q9Y442 160 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 V9GYQ6 96 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 NUP210Q8TEM1 1887 aaPredicted RBP0.49□□□□□ -2.33
USP3-209ENST00000558925 NINQ8N4C6 2090 aa0.49□□□□□ -2.33
USP3-209ENST00000558925 TECPR2O15040 1411 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 CD109Q6YHK3 1445 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 ROCK1Q13464 1354 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 ASCC3Q8N3C0 2202 aaKnown RBP0.48□□□□□ -2.33
USP3-209ENST00000558925 A0A1B0GV72 72 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 TRDV1A0A1B0GX56 115 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 C9orf170A2RU37 121 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 OR2T8A6NH00 312 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 E7EUB6 86 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 GABARAPH6UMI1 98 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 HIST1H2BKO60814 126 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 HIST1H2BJP06899 126 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 OR10J4P0C629 311 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 FABP2P12104 132 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 RPL7P18124 248 aaKnown RBP0.48□□□□□ -2.33
USP3-209ENST00000558925 S100A11P31949 105 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 RAB5CP51148 216 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 DSCR4P56555 118 aaPredicted RBP0.48□□□□□ -2.33
USP3-209ENST00000558925 CDK6Q00534 326 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 PLCXD2Q0VAA5 305 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 KLRD1Q13241 179 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 KRTAP21-3Q3LHN1 58 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 KRTAP26-1Q6PEX3 210 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 C4orf22Q6V702 233 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 ZNF833PQ6ZTB9 187 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 PRR15Q8IV56 129 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 TEX29Q8N6K0 151 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 BORCS5Q969J3 196 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 HYLS1Q96M11 299 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 TP53RKQ96S44 253 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 LINC00467Q9BRT7 94 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 EFCAB11Q9BUY7 163 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 RASL12Q9NYN1 266 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 ATPIF1Q9UII2 106 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 TRAPPC2LQ9UL33 140 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 NUBP2Q9Y5Y2 271 aa0.48□□□□□ -2.33
USP3-209ENST00000558925 SPTBP11277 2137 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 FANCMQ8IYD8 2048 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 IGHV1-58A0A0C4DH39 117 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 TRBV6-4A0A1B0GX49 114 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 hDV103S1A0JD37 113 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 C17orf112F2Z3M2 114 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 M0R2N4 97 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 INE1O15225 51 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 ERC2-IT1O76042 136 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 CST7O76096 145 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 MT-ND6P03923 174 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 RPL35P42766 123 aaKnown RBP0.47□□□□□ -2.33
USP3-209ENST00000558925 MPV17LQ2QL34 196 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 TMEM128Q5BJH2 165 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 FAM74A1Q5RGS3 127 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 PHF5AQ7RTV0 110 aaKnown RBP0.47□□□□□ -2.33
USP3-209ENST00000558925 SMIM15Q7Z3B0 74 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 CROCCP2Q86T23 111 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 FAM216BQ8N7L0 139 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 THEM6Q8WUY1 208 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 MUCL1Q96DR8 90 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 LINC00052Q96N35 136 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 CCDC32Q9BV29 185 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 OR2H1Q9GZK4 316 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 CENPHQ9H3R5 247 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 NDUFAF1Q9Y375 327 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 MUC4Q99102 2169 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 ZGRF1Q86YA3 2104 aa0.47□□□□□ -2.33
USP3-209ENST00000558925 YTHDC2Q9H6S0 1430 aaKnown RBP0.47□□□□□ -2.33
USP3-209ENST00000558925 ANKRD31Q8N7Z5 1873 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 FRMPD1Q5SYB0 1578 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 SIP14410 1827 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 A0A087WSZ3 146 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 TRAV5A0A0B4J249 113 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 F8W1H4 67 aa0.46□□□□□ -2.34
USP3-209ENST00000558925 H3BQV1 296 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms