RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZADH2Q8N4Q0 377 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 KLK15Q9H2R5 256 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 NHP2Q9NX24 153 aaKnown RBP9.05□□□□□ -0.96
LDLR-208ENST00000558518 INSIG2Q9Y5U4 225 aa9.05□□□□□ -0.96
LDLR-208ENST00000558518 SPAARA0A1B0GVQ0 90 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 NPIPB5A8MRT5 1133 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 AGRNO00468 2067 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 IGHV3-66A0A0C4DH42 116 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 FNDC10F2Z333 226 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 IGLC1P0CG04 106 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 CGB3P0DN86 165 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 CGB7P0DN87 165 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 SLC25A39Q9BZJ4 359 aaPredicted RBP9.04□□□□□ -0.96
LDLR-208ENST00000558518 TNRC18O15417 2968 aaPredicted RBP9.04□□□□□ -0.96
LDLR-208ENST00000558518 K7EQM0 130 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 C2orf91Q6ZV80 131 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 GTSCR1Q86UQ5 136 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 BCL6BQ8N143 479 aaPredicted RBP9.04□□□□□ -0.96
LDLR-208ENST00000558518 PSG8Q9UQ74 426 aa9.04□□□□□ -0.96
LDLR-208ENST00000558518 IGHV3-49A0A0A0MS15 119 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 TRAV17A0A0B4J275 112 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 TMEM189A5PLL7 270 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 ZNF788Q6ZQV5 615 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 SMIM12Q96EX1 92 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 FABP2P12104 132 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 FAM71F2Q6NXP2 309 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 OR5AN1Q8NGI8 311 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 TMEM160Q9NX00 188 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 SIGLEC8Q9NYZ4 499 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 PPIAL4EA0A075B759 164 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 PPIAL4FP0DN26 164 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 TMEM186Q96B77 213 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 MSRB1Q9NZV6 116 aa9.03□□□□□ -0.96
LDLR-208ENST00000558518 LTAP01374 205 aa9.02□□□□□ -0.97
LDLR-208ENST00000558518 JKAMPQ9P055 326 aa9.02□□□□□ -0.97
LDLR-208ENST00000558518 LINC00312Q9Y6C7 94 aa9.02□□□□□ -0.97
LDLR-208ENST00000558518 AMTNQ6UX39 209 aa9.02□□□□□ -0.97
LDLR-208ENST00000558518 TMEM167AQ8TBQ9 72 aa9.02□□□□□ -0.97
LDLR-208ENST00000558518 C7orf69Q9H7B7 122 aa9.02□□□□□ -0.97
LDLR-208ENST00000558518 RAI1Q7Z5J4 1906 aaPredicted RBP9.02□□□□□ -0.97
LDLR-208ENST00000558518 IGLV1-44P01699 117 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 PPBPP02775 128 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 GATA1P15976 413 aaPredicted RBP9.01□□□□□ -0.97
LDLR-208ENST00000558518 PSG3Q16557 428 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 CLEC2AQ6UVW9 174 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 RPEQ96AT9 228 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 IFI27L1Q96BM0 104 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 SPRY4Q9C004 299 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 PLSCR4Q9NRQ2 329 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 UFC1Q9Y3C8 167 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 M0R296 226 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 GP9P14770 177 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 POU2AF1Q16633 256 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 C8orf46Q8TAG6 207 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 MLST8Q9BVC4 326 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 MS4A6AQ9H2W1 248 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 DKK4Q9UBT3 224 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 OTOGLQ3ZCN5 2332 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 SORL1Q92673 2214 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 SPRY2O43597 315 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 LHBP01229 141 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 CD40P25942 277 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 HLA-DMBP28068 263 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 PAX2Q02962 417 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 UBALD2Q8IYN6 164 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 NDFIP1Q9BT67 221 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 AAMDCQ9H7C9 122 aa9.01□□□□□ -0.97
LDLR-208ENST00000558518 SAMD5Q5TGI4 173 aa9□□□□□ -0.97
LDLR-208ENST00000558518 LINC01545Q5VT33 79 aa9□□□□□ -0.97
LDLR-208ENST00000558518 TMEM108Q6UXF1 575 aa9□□□□□ -0.97
LDLR-208ENST00000558518 DEFB124Q8NES8 71 aa9□□□□□ -0.97
LDLR-208ENST00000558518 FOXC2Q99958 501 aa9□□□□□ -0.97
LDLR-208ENST00000558518 ONECUT1Q9UBC0 465 aa9□□□□□ -0.97
LDLR-208ENST00000558518 TMEM265A0A087WTH1 108 aa9□□□□□ -0.97
LDLR-208ENST00000558518 PPIAL4CA0A0B4J2A2 164 aa9□□□□□ -0.97
LDLR-208ENST00000558518 TEX48A0A1B0GUV7 120 aa9□□□□□ -0.97
LDLR-208ENST00000558518 C19orf71A6NCJ1 209 aa9□□□□□ -0.97
LDLR-208ENST00000558518 C9orf118A6NHY6 69 aa9□□□□□ -0.97
LDLR-208ENST00000558518 GAS8-AS1O95177 125 aa9□□□□□ -0.97
LDLR-208ENST00000558518 NPYP01303 97 aa9□□□□□ -0.97
LDLR-208ENST00000558518 PPIAL4GP0DN37 164 aa9□□□□□ -0.97
LDLR-208ENST00000558518 CD59P13987 128 aa9□□□□□ -0.97
LDLR-208ENST00000558518 NCBP2LA6PVI3 153 aaKnown RBP9□□□□□ -0.97
LDLR-208ENST00000558518 LY6HO94772 140 aa9□□□□□ -0.97
LDLR-208ENST00000558518 TGFAP01135 160 aa9□□□□□ -0.97
LDLR-208ENST00000558518 ZNF833PQ6ZTB9 187 aa9□□□□□ -0.97
LDLR-208ENST00000558518 SEM1Q6ZVN7 128 aa9□□□□□ -0.97
LDLR-208ENST00000558518 ORMDL3Q8N138 153 aa9□□□□□ -0.97
LDLR-208ENST00000558518 NGBQ9NPG2 151 aa9□□□□□ -0.97
LDLR-208ENST00000558518 OTORQ9NRC9 128 aa9□□□□□ -0.97
LDLR-208ENST00000558518 SMAD7O15105 426 aaKnown RBP8.99□□□□□ -0.97
LDLR-208ENST00000558518 LEPP41159 167 aa8.99□□□□□ -0.97
LDLR-208ENST00000558518 SEC11AP67812 179 aa8.99□□□□□ -0.97
LDLR-208ENST00000558518 SAMD13Q5VXD3 122 aa8.99□□□□□ -0.97
LDLR-208ENST00000558518 PRSS22Q9GZN4 317 aa8.99□□□□□ -0.97
LDLR-208ENST00000558518 DOPEY2Q9Y3R5 2298 aa8.99□□□□□ -0.97
LDLR-208ENST00000558518 SP9P0CG40 484 aa8.99□□□□□ -0.97
LDLR-208ENST00000558518 FXYD2P54710 66 aa8.99□□□□□ -0.97
LDLR-208ENST00000558518 FAM169BQ8N8A8 192 aa8.99□□□□□ -0.97
LDLR-208ENST00000558518 SMIM13P0DJ93 91 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms