RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 DLK1P80370 383 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 IFITM3Q01628 133 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 HIST1H1AQ02539 215 aaPredicted RBP7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 TRIQKQ629K1 86 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 UHRF2Q96PU4 802 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 LINC01587Q99440 93 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 ATG101Q9BSB4 218 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 ARL6Q9H0F7 186 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 NPVFQ9HCQ7 196 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 FLVCR2Q9UPI3 526 aa7.82□□□□□ -1.16
CCDC88C-213ENST00000557455 MUC4Q99102 2169 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 A0A087X0K7 114 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 CCNKO75909 580 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 SCGB1D2O95969 90 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 METTL15P1P0C7V9 234 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 IL7P13232 177 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 CXCL3P19876 107 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 ANXA7P20073 488 aaKnown RBP7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 AZU1P20160 251 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 PSG3Q16557 428 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 C4orf46Q504U0 113 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 C1orf134Q5TEV5 83 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 TEPPQ6URK8 271 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 TMEM14EPQ6UXP3 125 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 TMEM256Q8N2U0 113 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 OR10P1Q8NGE3 313 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 OR8A1Q8NGG7 326 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 ARV1Q9H2C2 271 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 MGAT4CQ9UBM8 478 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 RNF24Q9Y225 148 aa7.81□□□□□ -1.16
CCDC88C-213ENST00000557455 FNDC10F2Z333 226 aa7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 F5H768 121 aa7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 ATP5G1P05496 136 aa7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 HTN1P15515 57 aa7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 ATP5G3P48201 142 aa7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 FAM3BP58499 235 aaPredicted RBP7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 FCN2Q15485 313 aa7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 BAK1Q16611 211 aa7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 IAH1Q2TAA2 248 aaPredicted RBP7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 PATE2Q6UY27 113 aa7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 SDHCQ99643 169 aaPredicted RBP7.8□□□□□ -1.16
CCDC88C-213ENST00000557455 LINC00854A0A1B0GVQ3 168 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 PLAC8L1A1L4L8 177 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 CENPXA8MT69 81 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 K7EPK0 472 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 GOSR2O14653 212 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 NUDT3O95989 172 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 PRB4P10163 310 aaPredicted RBP7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 TAS2R60P59551 318 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 SLC38A11Q08AI6 406 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 ASAH1Q13510 395 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 PXDC1Q5TGL8 231 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 LCN15Q6UWW0 184 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 LINC00305Q7Z4B0 112 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 RPUSD4Q96CM3 377 aaKnown RBP7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 C16orf74Q96GX8 76 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 GSKIPQ9P0R6 139 aa7.79□□□□□ -1.16
CCDC88C-213ENST00000557455 CBY3A6NI87 242 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 AGPAT2O15120 278 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 MRPS12O15235 138 aaKnown RBP7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 TSC22D2O75157 780 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 CXCL2P19875 107 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 CDKN1BP46527 198 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 BCAP31P51572 246 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 TAS2R30P59541 319 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 MZT2BQ6NZ67 158 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 ZNF546Q86UE3 836 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 BPIFA4PQ86YQ2 179 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 ZBTB8BQ8NAP8 495 aaPredicted RBP7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 SLC50A1Q9BRV3 221 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 GGACTQ9BVM4 153 aa7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 TIMM8BQ9Y5J9 83 aaPredicted RBP7.78□□□□□ -1.16
CCDC88C-213ENST00000557455 COX7A2P2O60397 106 aa7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 SNRPCP09234 159 aaKnown RBP7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 BTCP35070 178 aa7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 CCL18P55774 89 aa7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 ZNF493Q6ZR52 646 aa7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 ZNF575Q86XF7 245 aa7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 ENKURQ8TC29 256 aa7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 NOP10Q9NPE3 64 aaKnown RBP7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 ZNF331Q9NQX6 463 aaPredicted RBP7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 RCL1Q9Y2P8 373 aaKnown RBP7.77□□□□□ -1.17
CCDC88C-213ENST00000557455 RYR1P21817 5038 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 NBDYA0A0U1RRE5 68 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 C7orf66A4D0T2 115 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 H7BYZ3 331 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 MBPP02686 304 aaPredicted RBP7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 ARL16Q0P5N6 197 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 OR10J6PQ8NGY7 276 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 ZNRF2Q8NHG8 242 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 RNASE8Q8TDE3 154 aaKnown RBP7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 TMEM263Q8WUH6 116 aaKnown RBP7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 MITD1Q8WV92 249 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 TMEM37Q8WXS4 190 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 C20orf144Q9BQM9 153 aa7.76□□□□□ -1.17
CCDC88C-213ENST00000557455 H3BTX0 84 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 L7N2F9 121 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 VAMP2P63027 116 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 RAB31Q13636 194 aa7.75□□□□□ -1.17
CCDC88C-213ENST00000557455 CLINT1Q14677 625 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms