RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 AKR1C8PQ5T2L2 129 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 GTSCR1Q86UQ5 136 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 APRG1Q8IVJ8 170 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 DEFB125Q8N687 156 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 CITED4Q96RK1 184 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 OR51M1Q9H341 326 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 HRH4Q9H3N8 390 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 MAP6D1Q9H9H5 199 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 RNF24Q9Y225 148 aa9.53□□□□□ -0.88
SHMT2-227ENST00000557269 OR11H12B2RN74 326 aa9.52□□□□□ -0.89
SHMT2-227ENST00000557269 OR7C2O60412 319 aa9.52□□□□□ -0.89
SHMT2-227ENST00000557269 NDUFB4O95168 129 aa9.52□□□□□ -0.89
SHMT2-227ENST00000557269 PRB4P10163 310 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-227ENST00000557269 DEFB131AP59861 70 aa9.52□□□□□ -0.89
SHMT2-227ENST00000557269 RNF182Q8N6D2 247 aa9.52□□□□□ -0.89
SHMT2-227ENST00000557269 RNF141Q8WVD5 230 aa9.52□□□□□ -0.89
SHMT2-227ENST00000557269 SAT2Q96F10 170 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-227ENST00000557269 PAXXQ9BUH6 204 aa9.52□□□□□ -0.89
SHMT2-227ENST00000557269 ACTR3CQ9C0K3 210 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-227ENST00000557269 TRBV19A0A075B6N1 114 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 STAG3L2P0CL84 134 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 STAG3L3P0CL85 134 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 ARL14EPLP0DKL9 152 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 HIST1H1EP10412 219 aaKnown RBP9.51□□□□□ -0.89
SHMT2-227ENST00000557269 KHDC3LQ587J8 217 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 PSMG4Q5JS54 123 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 FAM74A1Q5RGS3 127 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 BLNKQ8WV28 456 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 C16orf92Q96LL3 132 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 LINC00052Q96N35 136 aa9.51□□□□□ -0.89
SHMT2-227ENST00000557269 UMAD1C9J7I0 102 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 ISLRO14498 428 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 NBEAP1P0C6P0 100 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 C4BPBP20851 252 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 PSMB3P49720 205 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 MEOX2P50222 304 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 TAS2R45P59539 299 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 LCN15Q6UWW0 184 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 FAM213BQ8TBF2 198 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 ZNF331Q9NQX6 463 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-227ENST00000557269 MEGF8Q7Z7M0 2845 aa9.5□□□□□ -0.89
SHMT2-227ENST00000557269 CTXND1A0A1B0GTU2 59 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 KNCNA6PVL3 124 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 IGHV4-30-4P0DP06 118 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 GCHFRP30047 84 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 FGF8P55075 233 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-227ENST00000557269 UBE2L3P68036 154 aaKnown RBP9.49□□□□□ -0.89
SHMT2-227ENST00000557269 GUK1Q16774 197 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 ALKAL2Q6UX46 152 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 EXOC3-AS1Q8N2X6 119 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 PHYHIPLQ96FC7 376 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 FAM110AQ9BQ89 295 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 TMPRSS5Q9H3S3 457 aa9.49□□□□□ -0.89
SHMT2-227ENST00000557269 RBMY1BA6NDE4 496 aaKnown RBP9.48□□□□□ -0.89
SHMT2-227ENST00000557269 RBMY1EA6NEQ0 496 aaKnown RBP9.48□□□□□ -0.89
SHMT2-227ENST00000557269 ZNF705FA8MVS1 300 aaPredicted RBP9.48□□□□□ -0.89
SHMT2-227ENST00000557269 F6UB75 175 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 RBMY1DP0C7P1 496 aaKnown RBP9.48□□□□□ -0.89
SHMT2-227ENST00000557269 ID1P41134 155 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 SULT1A2P50226 295 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 CMC4P56277 68 aaPredicted RBP9.48□□□□□ -0.89
SHMT2-227ENST00000557269 SNRPD3P62318 126 aaKnown RBP9.48□□□□□ -0.89
SHMT2-227ENST00000557269 DEFB121Q5J5C9 76 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 GDF5OSQ5U4N7 250 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 EIF5AL1Q6IS14 154 aaKnown RBP9.48□□□□□ -0.89
SHMT2-227ENST00000557269 PQLC2Q6ZP29 291 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 LRRC20Q8TCA0 184 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 MRAPQ8TCY5 172 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 SRD5A3Q9H8P0 318 aa9.48□□□□□ -0.89
SHMT2-227ENST00000557269 A0A1B0GV50 99 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 MAP1LC3B2A6NCE7 125 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 PRAC2D3DTV9 90 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 ZNF253O75346 499 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 CXorf1O96002 111 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 ZNF705DP0CH99 300 aaPredicted RBP9.47□□□□□ -0.89
SHMT2-227ENST00000557269 ZNF705BP0CI00 300 aaPredicted RBP9.47□□□□□ -0.89
SHMT2-227ENST00000557269 RANP62826 216 aaKnown RBP9.47□□□□□ -0.89
SHMT2-227ENST00000557269 PSG3Q16557 428 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 SAMD13Q5VXD3 122 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 DPPA3Q6W0C5 159 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 SUN5Q8TC36 379 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 MBD3L1Q8WWY6 194 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 SLC50A1Q9BRV3 221 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 MAP1LC3BQ9GZQ8 125 aa9.47□□□□□ -0.89
SHMT2-227ENST00000557269 A8MZ25 164 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 M0R3E3 92 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 FRMD6-AS1P0C7T7 363 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 PDE6HQ13956 83 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 ICAM4Q14773 271 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 ACTL10Q5JWF8 245 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 LINC00322Q6ZN03 302 aaPredicted RBP9.46□□□□□ -0.9
SHMT2-227ENST00000557269 ZNF738Q8NE65 137 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 SFT2D1Q8WV19 159 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 FBN3Q75N90 2809 aa9.46□□□□□ -0.9
SHMT2-227ENST00000557269 H2AFB1P0C5Y9 115 aa9.45□□□□□ -0.9
SHMT2-227ENST00000557269 RPL35AP18077 110 aaKnown RBP9.45□□□□□ -0.9
SHMT2-227ENST00000557269 RAB5CP51148 216 aa9.45□□□□□ -0.9
SHMT2-227ENST00000557269 CCL20P78556 96 aa9.45□□□□□ -0.9
SHMT2-227ENST00000557269 PSG9Q00887 426 aa9.45□□□□□ -0.9
SHMT2-227ENST00000557269 IQCF2Q8IXL9 164 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms