RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 CHRDL1Q9BU40 450 aa8.86□□□□□ -0.99
VPS33B-204ENST00000554660 V9GYV3 84 aa8.86□□□□□ -0.99
VPS33B-204ENST00000554660 LCE6AA0A183 80 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 A0A1W2PPI3 338 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 HELTA6NFD8 242 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 LINC01548A6NM66 108 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 K7EN84 100 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 REG1AP05451 166 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 TMEM11P17152 192 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 CX3CL1P78423 397 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 DIAPH2-AS1Q14236 149 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 PSG5Q15238 335 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 OR10J3Q5JRS4 329 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 C1orf194Q5T5A4 169 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 ETFRF1Q6IPR1 90 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 MIR17HGQ75NE6 70 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 MMD2Q8IY49 270 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 LEAP2Q969E1 77 aa8.85□□□□□ -0.99
VPS33B-204ENST00000554660 FLYWCH2Q96CP2 140 aaKnown RBP8.85□□□□□ -0.99
VPS33B-204ENST00000554660 ZNF256Q9Y2P7 627 aaPredicted RBP8.85□□□□□ -0.99
VPS33B-204ENST00000554660 OOSP1A8MZH6 123 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 HLA-DQA1P01909 254 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 ADMP35318 185 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 LGALS7P47929 136 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 PRRX1P54821 245 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 CENPWQ5EE01 88 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 SPATA31B1PQ5VZV4 182 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 SBSPONQ8IVN8 264 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 ZNF664Q8N3J9 261 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 OR9G1Q8NH87 305 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 CMTM2Q8TAZ6 248 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 ST6GALNAC6Q969X2 333 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 HARBI1Q96MB7 349 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 ZNF430Q9H8G1 570 aaPredicted RBP8.84□□□□□ -0.99
VPS33B-204ENST00000554660 WASHC3Q9Y3C0 194 aa8.84□□□□□ -0.99
VPS33B-204ENST00000554660 IGKV1OR2-108A0A075B7D4 117 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 SMIM27A0A1W2PRY6 76 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 SRRM4A7MD48 611 aaKnown RBP8.83□□□□□ -1
VPS33B-204ENST00000554660 CORTO00230 105 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 IGHG2P01859 326 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 IGKV1-16P04430 117 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 CRISP2P16562 243 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 GNG10P50151 68 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 ERVFC1-1P60608 527 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 VMA21Q3ZAQ7 101 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 ZFAND6Q6FIF0 208 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 OR5T1Q8NG75 326 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 OR10X1Q8NGY0 326 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 ZNF503Q96F45 646 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 IGF2BP2-AS1Q96M15 143 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 MS4A10Q96PG2 267 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 MRPL20Q9BYC9 149 aaKnown RBP8.83□□□□□ -1
VPS33B-204ENST00000554660 MRPL18Q9H0U6 180 aaKnown RBP8.83□□□□□ -1
VPS33B-204ENST00000554660 DNAJC4Q9NNZ3 241 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 NAGKQ9UJ70 344 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 AMMECR1Q9Y4X0 333 aaPredicted RBP8.83□□□□□ -1
VPS33B-204ENST00000554660 SMAD5-AS1Q9Y6J3 95 aa8.83□□□□□ -1
VPS33B-204ENST00000554660 CRYGCP07315 174 aa8.82□□□□□ -1
VPS33B-204ENST00000554660 ZNF600Q6ZNG1 722 aa8.82□□□□□ -1
VPS33B-204ENST00000554660 TEX45Q8NA69 505 aa8.82□□□□□ -1
VPS33B-204ENST00000554660 OR1L6Q8NGR2 347 aa8.82□□□□□ -1
VPS33B-204ENST00000554660 FAM167A-AS1Q96KT0 104 aa8.82□□□□□ -1
VPS33B-204ENST00000554660 C20orf144Q9BQM9 153 aa8.82□□□□□ -1
VPS33B-204ENST00000554660 SRSF8Q9BRL6 282 aaKnown RBP8.82□□□□□ -1
VPS33B-204ENST00000554660 CSMD3Q7Z407 3707 aa8.82□□□□□ -1
VPS33B-204ENST00000554660 IGHV3-72A0A0B4J1Y9 119 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 IZUMO1RA6ND01 250 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 PGPEP1LA6NFU8 196 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 GGTLC3B5MD39 225 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 OR7C2O60412 319 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 CRYBB3P26998 211 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 REG1BP48304 166 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 PLP1P60201 277 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 FHL3Q13643 280 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 DMRTA1Q5VZB9 504 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 TEX43Q6ZNM6 134 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 TRGV9Q99603 122 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 RNF5Q99942 180 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 HINT2Q9BX68 163 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 SLC25A2Q9BXI2 301 aa8.81□□□□□ -1
VPS33B-204ENST00000554660 MRPL27Q9P0M9 148 aaKnown RBP8.81□□□□□ -1
VPS33B-204ENST00000554660 NCBP2LA6PVI3 153 aaKnown RBP8.8□□□□□ -1
VPS33B-204ENST00000554660 ZNF705GA8MUZ8 300 aaPredicted RBP8.8□□□□□ -1
VPS33B-204ENST00000554660 FCN1O00602 326 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 COX7A2P2O60397 106 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 IGLV2-23P01705 113 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 IGLV2-8P01709 118 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 RD3LP0DJH9 198 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 UBE2L3P68036 154 aaKnown RBP8.8□□□□□ -1
VPS33B-204ENST00000554660 FOXE3Q13461 319 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 C10orf113Q5VZT2 155 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 TOMM20LQ6UXN7 152 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 ADAMTSL5Q6ZMM2 481 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 ATP5L2Q7Z4Y8 100 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 C4orf3Q8WVX3 66 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 PRO1933Q9H354 126 aa8.8□□□□□ -1
VPS33B-204ENST00000554660 SNURFLB1AK76 121 aa8.79□□□□□ -1
VPS33B-204ENST00000554660 FRMD6-AS1P0C7T7 363 aa8.79□□□□□ -1
VPS33B-204ENST00000554660 CBLN1P23435 193 aa8.79□□□□□ -1
VPS33B-204ENST00000554660 CFHR3Q02985 330 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms