RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CSMD2Q7Z408 3487 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 ANKRD17O75179 2603 aaKnown RBP20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 CR1P17927 2039 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 HOXA5P20719 270 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 TPPP2P59282 170 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 RPL15P61313 204 aaKnown RBP20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 CYB5R2Q6BCY4 276 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 ARL6IP6Q8N6S5 226 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 AAMDCQ9H7C9 122 aa20.38■□□□□ 0.85
CCDC88C-205ENST00000553403 IGHV3-35A0A0C4DH35 117 aa20.37■□□□□ 0.85
CCDC88C-205ENST00000553403 ZNF253O75346 499 aa20.37■□□□□ 0.85
CCDC88C-205ENST00000553403 AKR1D1P51857 326 aa20.37■□□□□ 0.85
CCDC88C-205ENST00000553403 NOL4LQ96MY1 436 aaPredicted RBP20.37■□□□□ 0.85
CCDC88C-205ENST00000553403 OTOGQ6ZRI0 2925 aa20.36■□□□□ 0.85
CCDC88C-205ENST00000553403 ZNF705GA8MUZ8 300 aaPredicted RBP20.36■□□□□ 0.85
CCDC88C-205ENST00000553403 GATCO43716 136 aaKnown RBP20.36■□□□□ 0.85
CCDC88C-205ENST00000553403 GOLT1AQ6ZVE7 132 aa20.36■□□□□ 0.85
CCDC88C-205ENST00000553403 Q86TA4 180 aa20.36■□□□□ 0.85
CCDC88C-205ENST00000553403 TMEM75Q8N9X5 138 aa20.36■□□□□ 0.85
CCDC88C-205ENST00000553403 SMIM27A0A1W2PRY6 76 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 K7EQM0 130 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 RPL19P84098 196 aaKnown RBP20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 Q6ZS46 218 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 NUDT10Q8NFP7 164 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 NUDT11Q96G61 164 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 SGK494Q96LW2 274 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 SERTAD4Q9NUC0 356 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 ZNF492Q9P255 531 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 CLPSL1A2RUU4 121 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 IGLV2-11P01706 119 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 CFHR3Q02985 330 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 C1orf194Q5T5A4 169 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 GRAMD2BQ96HH9 432 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 SMAD5-AS1Q9Y6J3 95 aa20.35■□□□□ 0.85
CCDC88C-205ENST00000553403 SERTM2A0A1B0GWG4 89 aa20.34■□□□□ 0.85
CCDC88C-205ENST00000553403 DIRC3C9JPN6 131 aa20.34■□□□□ 0.85
CCDC88C-205ENST00000553403 BUB3O43684 328 aa20.34■□□□□ 0.85
CCDC88C-205ENST00000553403 IGLV1-40P01703 118 aa20.34■□□□□ 0.85
CCDC88C-205ENST00000553403 TMEM183AQ8IXX5 376 aa20.34■□□□□ 0.85
CCDC88C-205ENST00000553403 A0A087X0K7 114 aa20.33■□□□□ 0.85
CCDC88C-205ENST00000553403 Q6YL49 198 aa20.33■□□□□ 0.85
CCDC88C-205ENST00000553403 METTL26Q96S19 204 aa20.33■□□□□ 0.85
CCDC88C-205ENST00000553403 TRAPPC1Q9Y5R8 145 aa20.33■□□□□ 0.85
CCDC88C-205ENST00000553403 CCDC168Q8NDH2 2452 aa20.32■□□□□ 0.84
CCDC88C-205ENST00000553403 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP20.32■□□□□ 0.84
CCDC88C-205ENST00000553403 ARL3P36405 182 aa20.32■□□□□ 0.84
CCDC88C-205ENST00000553403 U3KQE9 123 aa20.32■□□□□ 0.84
CCDC88C-205ENST00000553403 IGHV3OR16-8A0A075B7F1 116 aa20.32■□□□□ 0.84
CCDC88C-205ENST00000553403 CSN1S1P47710 185 aa20.32■□□□□ 0.84
CCDC88C-205ENST00000553403 PRR27Q6MZM9 219 aa20.32■□□□□ 0.84
CCDC88C-205ENST00000553403 ZFP30Q9Y2G7 519 aa20.32■□□□□ 0.84
CCDC88C-205ENST00000553403 PRRC2AP48634 2157 aaKnown RBP20.31■□□□□ 0.84
CCDC88C-205ENST00000553403 A0A0G2JLM5 398 aa20.31■□□□□ 0.84
CCDC88C-205ENST00000553403 PF4V1P10720 104 aa20.31■□□□□ 0.84
CCDC88C-205ENST00000553403 CDX1P47902 265 aaPredicted RBP20.31■□□□□ 0.84
CCDC88C-205ENST00000553403 PSG3Q16557 428 aa20.31■□□□□ 0.84
CCDC88C-205ENST00000553403 PRDM13Q9H4Q3 707 aa20.31■□□□□ 0.84
CCDC88C-205ENST00000553403 COX19Q49B96 90 aa20.3■□□□□ 0.84
CCDC88C-205ENST00000553403 PRNTQ86SH4 94 aa20.3■□□□□ 0.84
CCDC88C-205ENST00000553403 VPREB3Q9UKI3 123 aa20.3■□□□□ 0.84
CCDC88C-205ENST00000553403 TRAV8-1A0A0A6YYK1 113 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 C19orf71A6NCJ1 209 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 S100A8P05109 93 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 LINC00518Q8N0U6 118 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 KLK15Q9H2R5 256 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 PSG8Q9UQ74 426 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 IZUMO1RA6ND01 250 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 M0R3E3 92 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 PRSS22Q9GZN4 317 aa20.29■□□□□ 0.84
CCDC88C-205ENST00000553403 ZNF785A8K8V0 405 aa20.28■□□□□ 0.84
CCDC88C-205ENST00000553403 NDUFA4O00483 81 aa20.28■□□□□ 0.84
CCDC88C-205ENST00000553403 CT83Q5H943 113 aa20.28■□□□□ 0.84
CCDC88C-205ENST00000553403 ZNF331Q9NQX6 463 aaPredicted RBP20.28■□□□□ 0.84
CCDC88C-205ENST00000553403 AKAP9Q99996 3911 aa20.27■□□□□ 0.84
CCDC88C-205ENST00000553403 TMEM89A2RUT3 159 aa20.27■□□□□ 0.84
CCDC88C-205ENST00000553403 FBLL1A6NHQ2 334 aaKnown RBP20.27■□□□□ 0.84
CCDC88C-205ENST00000553403 TSKUQ8WUA8 353 aa20.27■□□□□ 0.84
CCDC88C-205ENST00000553403 RPP21Q9H633 154 aaKnown RBP20.27■□□□□ 0.84
CCDC88C-205ENST00000553403 MEOX2P50222 304 aa20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 TCL1AP56279 114 aa20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 COA6Q5JTJ3 125 aaKnown RBP20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 LINC00322Q6ZN03 302 aaPredicted RBP20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 DAZAP1Q96EP5 407 aaKnown RBP20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 GNB1LQ9BYB4 327 aa20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 CA1P00915 261 aaPredicted RBP20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 IGHG4P01861 327 aa20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 WDR73Q6P4I2 378 aa20.26■□□□□ 0.83
CCDC88C-205ENST00000553403 VPS13CQ709C8 3753 aa20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 P01737 135 aa20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 FAM209BQ5JX69 171 aa20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 CIARTQ8N365 385 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 TEX29Q8N6K0 151 aa20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 OR4X2Q8NGF9 303 aa20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 SLC50A1Q9BRV3 221 aa20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 NAT8BQ9UHF3 227 aa20.25■□□□□ 0.83
CCDC88C-205ENST00000553403 TRBV12-3P01733 135 aa20.24■□□□□ 0.83
CCDC88C-205ENST00000553403 MT-ND6P03923 174 aa20.24■□□□□ 0.83
CCDC88C-205ENST00000553403 HIST3H2BBQ8N257 126 aa20.24■□□□□ 0.83
CCDC88C-205ENST00000553403 GBGT1Q8N5D6 347 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms