RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 SPANXA1Q9NS26 97 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 ZFP30Q9Y2G7 519 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 CSPG4Q6UVK1 2322 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 TCRBV4S1A1TA0A5B7 111 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 YIF1AO95070 293 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 REG1AP05451 166 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 LINC00869P0C866 280 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 IGLC1P0CG04 106 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 CAMPP49913 170 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 SNRPEP62304 92 aaKnown RBP6.54□□□□□ -1.36
VPS29-203ENST00000546588 GNB1P62873 340 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 KIAA0141Q14154 515 aaPredicted RBP6.54□□□□□ -1.36
VPS29-203ENST00000546588 ZNF726P1Q15940 193 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 AWAT1Q58HT5 328 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 AKR1C8PQ5T2L2 129 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 SPSB3Q6PJ21 355 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 UQCC3Q6UW78 93 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 Q6ZRG5 221 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 RPP25LQ8N5L8 163 aaKnown RBP6.54□□□□□ -1.36
VPS29-203ENST00000546588 ZNF414Q96IQ9 312 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 LINC00052Q96N35 136 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 FAM103A1Q9BTL3 118 aaKnown RBP6.54□□□□□ -1.36
VPS29-203ENST00000546588 MAP1LC3CQ9BXW4 147 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 SMDT1Q9H4I9 107 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 DNAJC4Q9NNZ3 241 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 RPRMQ9NS64 109 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 MRPL36Q9P0J6 103 aaKnown RBP6.54□□□□□ -1.36
VPS29-203ENST00000546588 CUBNO60494 3623 aa6.54□□□□□ -1.36
VPS29-203ENST00000546588 MAP1AP78559 2803 aaPredicted RBP6.54□□□□□ -1.36
VPS29-203ENST00000546588 TRAV30A0A087WSZ9 112 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 TRAV41A0A0B4J266 112 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 CTXND1A0A1B0GTU2 59 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 CXorf65A6NEN9 183 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 FAM223BA6NKX1 122 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 LINC01548A6NM66 108 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 ZNF705EA8MWA4 302 aaPredicted RBP6.53□□□□□ -1.36
VPS29-203ENST00000546588 OR5G3P0C626 314 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 YPEL3P61236 119 aaPredicted RBP6.53□□□□□ -1.36
VPS29-203ENST00000546588 AKR1C1Q04828 323 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 C19orf35Q6ZS72 473 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 CYP2G1PQ6ZSU1 146 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 SLC35E3Q7Z769 313 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 FAM223AQ8IWN6 122 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 WIPF2Q8TF74 440 aaPredicted RBP6.53□□□□□ -1.36
VPS29-203ENST00000546588 RPUSD4Q96CM3 377 aaKnown RBP6.53□□□□□ -1.36
VPS29-203ENST00000546588 CXorf58Q96LI9 332 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 VSIRQ9H7M9 311 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 ZNF702PQ9H963 129 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 GAR1Q9NY12 217 aaKnown RBP6.53□□□□□ -1.36
VPS29-203ENST00000546588 RFNGQ9Y644 331 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 PXMP4Q9Y6I8 212 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 ARL2-SNX15V9GYD0 113 aa6.53□□□□□ -1.36
VPS29-203ENST00000546588 TRBV7-1A0A0A6YYK4 115 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 TGIF2-C20orf24A0A0A6YYL0 155 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 A0A0U1RRA0 63 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 PDE6DO43924 150 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 IGKV1-17P01599 117 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 IGHG4P01861 327 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 HBE1P02100 147 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 PSMB8P28062 276 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 RND2P52198 227 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 HILS1P60008 231 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 CKS1BP61024 79 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 BLCAPP62952 87 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 ACOT6Q3I5F7 207 aaPredicted RBP6.52□□□□□ -1.37
VPS29-203ENST00000546588 UNQ5815/PRO19632Q6UWF5 114 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 ZNF709Q8N972 641 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 ZNF738Q8NE65 137 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 OR2T6Q8NHC8 308 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 ZNF502Q8TBZ5 544 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 GATAD1Q8WUU5 269 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 ORAOV1Q8WV07 137 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 USMG5Q96IX5 58 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 ATG101Q9BSB4 218 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 MRPL32Q9BYC8 188 aaKnown RBP6.52□□□□□ -1.37
VPS29-203ENST00000546588 NPFFR1Q9GZQ6 430 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 SLC39A9Q9NUM3 307 aa6.52□□□□□ -1.37
VPS29-203ENST00000546588 CSDC2Q9Y534 153 aaKnown RBP6.52□□□□□ -1.37
VPS29-203ENST00000546588 A8MWP6 167 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 G3V318 75 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 SLC17A3O00476 420 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 TOMM40O96008 361 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 DEFA4P12838 97 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 OR10J1P30954 320 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 NPBWR1P48145 328 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 RPL32P62910 135 aaKnown RBP6.51□□□□□ -1.37
VPS29-203ENST00000546588 FABP9Q0Z7S8 132 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 LY6EQ16553 131 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 FFAR4Q5NUL3 377 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 MIC13Q5XKP0 118 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 SIGLECL1Q8N7X8 197 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 OR10G4Q8NGN3 311 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 OR10G9Q8NGN4 311 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 OR10G7Q8NGN6 311 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 TMEM190Q8WZ59 177 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 PRSS22Q9GZN4 317 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 C21orf62Q9NYP8 219 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 MYO9AB2RTY4 2548 aa6.51□□□□□ -1.37
VPS29-203ENST00000546588 HECTD1Q9ULT8 2610 aa6.5□□□□□ -1.37
VPS29-203ENST00000546588 WI2-2373I1.2A0A1W2PRP0 233 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms