RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 KMT2CQ8NEZ4 4911 aaKnown RBP11.41□□□□□ -0.58
CCDC78-216ENST00000544996 MRPS12O15235 138 aaKnown RBP11.4□□□□□ -0.58
CCDC78-216ENST00000544996 CXCL3P19876 107 aa11.4□□□□□ -0.58
CCDC78-216ENST00000544996 CEMP1Q6PRD7 247 aaPredicted RBP11.4□□□□□ -0.58
CCDC78-216ENST00000544996 ZNF709Q8N972 641 aa11.4□□□□□ -0.58
CCDC78-216ENST00000544996 THAP6Q8TBB0 222 aa11.4□□□□□ -0.58
CCDC78-216ENST00000544996 SLC50A1Q9BRV3 221 aa11.4□□□□□ -0.58
CCDC78-216ENST00000544996 RNF126Q9BV68 326 aa11.4□□□□□ -0.58
CCDC78-216ENST00000544996 SLC35B3Q9H1N7 401 aa11.4□□□□□ -0.58
CCDC78-216ENST00000544996 KCNIP2Q9NS61 270 aa11.4□□□□□ -0.58
CCDC78-216ENST00000544996 KLK5Q9Y337 293 aaPredicted RBP11.4□□□□□ -0.58
CCDC78-216ENST00000544996 AGRNO00468 2067 aa11.39□□□□□ -0.59
CCDC78-216ENST00000544996 CNN1P51911 297 aaKnown RBP11.39□□□□□ -0.59
CCDC78-216ENST00000544996 NANOS2P60321 138 aaKnown RBP11.39□□□□□ -0.59
CCDC78-216ENST00000544996 PSG3Q16557 428 aa11.39□□□□□ -0.59
CCDC78-216ENST00000544996 MORN5Q5VZ52 161 aa11.39□□□□□ -0.59
CCDC78-216ENST00000544996 PHLDA1Q8WV24 401 aaPredicted RBP11.39□□□□□ -0.59
CCDC78-216ENST00000544996 HRH4Q9H3N8 390 aa11.39□□□□□ -0.59
CCDC78-216ENST00000544996 IGHV3OR16-12A0A075B7B8 117 aa11.38□□□□□ -0.59
CCDC78-216ENST00000544996 SNRPCP09234 159 aaKnown RBP11.38□□□□□ -0.59
CCDC78-216ENST00000544996 RBMY1A1P0DJD3 496 aaKnown RBP11.38□□□□□ -0.59
CCDC78-216ENST00000544996 RBMY1CP0DJD4 496 aa11.38□□□□□ -0.59
CCDC78-216ENST00000544996 RBMY1FQ15415 496 aaKnown RBP11.38□□□□□ -0.59
CCDC78-216ENST00000544996 GUK1Q16774 197 aa11.38□□□□□ -0.59
CCDC78-216ENST00000544996 ZNF705AQ6ZN79 300 aaPredicted RBP11.38□□□□□ -0.59
CCDC78-216ENST00000544996 ATP5SQ99766 215 aa11.38□□□□□ -0.59
CCDC78-216ENST00000544996 WDR61Q9GZS3 305 aaKnown RBP11.38□□□□□ -0.59
CCDC78-216ENST00000544996 MED28Q9H204 178 aa11.38□□□□□ -0.59
CCDC78-216ENST00000544996 ZNF331Q9NQX6 463 aaPredicted RBP11.38□□□□□ -0.59
CCDC78-216ENST00000544996 MBD2Q9UBB5 411 aa11.38□□□□□ -0.59
CCDC78-216ENST00000544996 GOLT1BQ9Y3E0 138 aa11.38□□□□□ -0.59
CCDC78-216ENST00000544996 TRAV5A0A0B4J249 113 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 SMIM9A6NGZ8 99 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 C17orf112F2Z3M2 114 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 AMBPP02760 352 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 IGLC2P0DOY2 106 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 RPL12P30050 165 aaKnown RBP11.37□□□□□ -0.59
CCDC78-216ENST00000544996 HIST1H1AQ02539 215 aaPredicted RBP11.37□□□□□ -0.59
CCDC78-216ENST00000544996 OR8A1Q8NGG7 326 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 RPUSD4Q96CM3 377 aaKnown RBP11.37□□□□□ -0.59
CCDC78-216ENST00000544996 NEU1Q99519 415 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 PPP1R14DQ9NXH3 145 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 HSPB11Q9Y547 144 aa11.37□□□□□ -0.59
CCDC78-216ENST00000544996 A8MTW9 85 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 ZNF705FA8MVS1 300 aaPredicted RBP11.36□□□□□ -0.59
CCDC78-216ENST00000544996 H3BQ15 152 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 H3BTX0 84 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 IFNA5P01569 189 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 ZNF705DP0CH99 300 aaPredicted RBP11.36□□□□□ -0.59
CCDC78-216ENST00000544996 ZNF705BP0CI00 300 aaPredicted RBP11.36□□□□□ -0.59
CCDC78-216ENST00000544996 HLA-DMBP28068 263 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 RHOBP62745 196 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 AMTNQ6UX39 209 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 OR11H7Q8NGC8 314 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 SCGB1C1Q8TD33 95 aa11.36□□□□□ -0.59
CCDC78-216ENST00000544996 CSMD3Q7Z407 3707 aa11.35□□□□□ -0.59
CCDC78-216ENST00000544996 TMEM189A5PLL7 270 aa11.35□□□□□ -0.59
CCDC78-216ENST00000544996 SPINK13Q1W4C9 94 aa11.35□□□□□ -0.59
CCDC78-216ENST00000544996 IGF2BP2-AS1Q96M15 143 aa11.35□□□□□ -0.59
CCDC78-216ENST00000544996 TMEM208Q9BTX3 173 aa11.35□□□□□ -0.59
CCDC78-216ENST00000544996 TMEM14CQ9P0S9 112 aa11.35□□□□□ -0.59
CCDC78-216ENST00000544996 C11orf94C9JXX5 98 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 BOLA2-SMG1P6H3BVE0 249 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 SLC17A3O00476 420 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 ZNF253O75346 499 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 HBE1P02100 147 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 FCN2Q15485 313 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 RGS21Q2M5E4 152 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 GCSAMLQ5JQS6 135 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 SAT2Q96F10 170 aaPredicted RBP11.34□□□□□ -0.59
CCDC78-216ENST00000544996 SMIM3Q9BZL3 60 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 RFNGQ9Y644 331 aa11.34□□□□□ -0.59
CCDC78-216ENST00000544996 TENM2Q9NT68 2774 aa11.33□□□□□ -0.6
CCDC78-216ENST00000544996 M0R2Z0 102 aa11.33□□□□□ -0.6
CCDC78-216ENST00000544996 INSP01308 110 aa11.33□□□□□ -0.6
CCDC78-216ENST00000544996 HIST1H1EP10412 219 aaKnown RBP11.33□□□□□ -0.6
CCDC78-216ENST00000544996 C1orf158Q8N1D5 194 aa11.33□□□□□ -0.6
CCDC78-216ENST00000544996 OR10J6PQ8NGY7 276 aa11.33□□□□□ -0.6
CCDC78-216ENST00000544996 MRPL32Q9BYC8 188 aaKnown RBP11.33□□□□□ -0.6
CCDC78-216ENST00000544996 ZNF586Q9NXT0 402 aa11.33□□□□□ -0.6
CCDC78-216ENST00000544996 TIMM9Q9Y5J7 89 aa11.33□□□□□ -0.6
CCDC78-216ENST00000544996 TRBV19A0A075B6N1 114 aa11.32□□□□□ -0.6
CCDC78-216ENST00000544996 EMP1P54849 157 aa11.32□□□□□ -0.6
CCDC78-216ENST00000544996 PDE6HQ13956 83 aa11.32□□□□□ -0.6
CCDC78-216ENST00000544996 RRN3P1Q2M238 152 aa11.32□□□□□ -0.6
CCDC78-216ENST00000544996 C2CD4CQ8TF44 421 aa11.32□□□□□ -0.6
CCDC78-216ENST00000544996 ASB13Q8WXK3 278 aa11.32□□□□□ -0.6
CCDC78-216ENST00000544996 STARD9Q9P2P6 4700 aa11.31□□□□□ -0.6
CCDC78-216ENST00000544996 SPART-AS1P0CW21 52 aa11.31□□□□□ -0.6
CCDC78-216ENST00000544996 BLNKQ8WV28 456 aa11.31□□□□□ -0.6
CCDC78-216ENST00000544996 SLC25A2Q9BXI2 301 aa11.31□□□□□ -0.6
CCDC78-216ENST00000544996 TRAV10A0A0B4J240 114 aa11.3□□□□□ -0.6
CCDC78-216ENST00000544996 TEX48A0A1B0GUV7 120 aa11.3□□□□□ -0.6
CCDC78-216ENST00000544996 LOC102723971A0A1B0GUV8 181 aa11.3□□□□□ -0.6
CCDC78-216ENST00000544996 CRXO43186 299 aaPredicted RBP11.3□□□□□ -0.6
CCDC78-216ENST00000544996 GIPP09681 153 aaPredicted RBP11.3□□□□□ -0.6
CCDC78-216ENST00000544996 PYYP10082 97 aa11.3□□□□□ -0.6
CCDC78-216ENST00000544996 PRB4P10163 310 aaPredicted RBP11.3□□□□□ -0.6
CCDC78-216ENST00000544996 TSPOP30536 169 aa11.3□□□□□ -0.6
CCDC78-216ENST00000544996 FFAR4Q5NUL3 377 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms