RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PCP2Q8IVA1 136 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 ZCCHC24Q8N2G6 241 aaKnown RBP11.55□□□□□ -0.56
LIMS1-215ENST00000544547 DDB2Q92466 427 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 OTORQ9NRC9 128 aa11.55□□□□□ -0.56
LIMS1-215ENST00000544547 XIRP2A4UGR9 3374 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 IGHV3OR16-12A0A075B7B8 117 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 RNASE2P10153 161 aaKnown RBP11.54□□□□□ -0.56
LIMS1-215ENST00000544547 PAX1P15863 534 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 CSPG4Q6UVK1 2322 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 TMEM213A2RRL7 107 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 DEFB104AQ8WTQ1 72 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 HOXA3O43365 443 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-215ENST00000544547 EMP1P54849 157 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 CD300EQ496F6 205 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-215ENST00000544547 FAM106AQ4KMX7 169 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-215ENST00000544547 SRSF8Q9BRL6 282 aaKnown RBP11.54□□□□□ -0.56
LIMS1-215ENST00000544547 RAXQ9Y2V3 346 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 PHLDA3Q9Y5J5 127 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 PCNX2A6NKB5 2137 aa11.54□□□□□ -0.56
LIMS1-215ENST00000544547 LINC00310P59036 64 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 IGHV3-49A0A0A0MS15 119 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 PRR20EP86478 221 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 PRR20CP86479 221 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 PRR20DP86480 221 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 PRR20BP86481 221 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 PRR20AP86496 221 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 KLRB1Q12918 225 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 C9orf106Q8NAJ2 232 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 DPM3Q9P2X0 92 aa11.53□□□□□ -0.56
LIMS1-215ENST00000544547 ATP5LO75964 103 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 PRTN3P24158 256 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 ZNF134P52741 427 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 MORN5Q5VZ52 161 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 SLC25A2Q9BXI2 301 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 RHOGP84095 191 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 TMEM249Q2WGJ8 235 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 JMJD8Q96S16 334 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 SPRR3Q9UBC9 169 aa11.52□□□□□ -0.56
LIMS1-215ENST00000544547 A0A1B0GW15 77 aa11.52□□□□□ -0.57
LIMS1-215ENST00000544547 C2orf70A6NJV1 201 aa11.52□□□□□ -0.57
LIMS1-215ENST00000544547 Q6AWC8 147 aa11.52□□□□□ -0.57
LIMS1-215ENST00000544547 C1orf162Q8NEQ5 155 aaPredicted RBP11.52□□□□□ -0.57
LIMS1-215ENST00000544547 PRUNE2Q8WUY3 3088 aa11.52□□□□□ -0.57
LIMS1-215ENST00000544547 IGHV3-66A0A0C4DH42 116 aa11.52□□□□□ -0.57
LIMS1-215ENST00000544547 HAX1O00165 279 aa11.52□□□□□ -0.57
LIMS1-215ENST00000544547 SCGB3A1Q96QR1 104 aa11.52□□□□□ -0.57
LIMS1-215ENST00000544547 TTTY13Q9BZ97 58 aa11.52□□□□□ -0.57
LIMS1-215ENST00000544547 RPUSD1Q9UJJ7 312 aaKnown RBP11.52□□□□□ -0.57
LIMS1-215ENST00000544547 BSPH1Q075Z2 132 aa11.51□□□□□ -0.57
LIMS1-215ENST00000544547 PIMREGQ9BSJ6 248 aa11.51□□□□□ -0.57
LIMS1-215ENST00000544547 CUL9Q8IWT3 2517 aa11.51□□□□□ -0.57
LIMS1-215ENST00000544547 TMEM170BQ5T4T1 132 aa11.51□□□□□ -0.57
LIMS1-215ENST00000544547 IGKV1D-17A0A075B6S4 117 aa11.51□□□□□ -0.57
LIMS1-215ENST00000544547 FAM231DQ6ZW35 169 aa11.51□□□□□ -0.57
LIMS1-215ENST00000544547 ZNF747Q9BV97 191 aa11.51□□□□□ -0.57
LIMS1-215ENST00000544547 CHD9Q3L8U1 2897 aa11.51□□□□□ -0.57
LIMS1-215ENST00000544547 TNRC6AQ8NDV7 1962 aaKnown RBP11.51□□□□□ -0.57
LIMS1-215ENST00000544547 M0R381 172 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 DKK1O94907 266 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 RPS20P60866 119 aaKnown RBP11.5□□□□□ -0.57
LIMS1-215ENST00000544547 SCRT2Q9NQ03 307 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 MALRD1Q5VYJ5 2156 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 NPIPB6E9PJ23 425 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.5□□□□□ -0.57
LIMS1-215ENST00000544547 RNF138Q8WVD3 245 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 TMEM14BQ9NUH8 114 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 DKK2Q9UBU2 259 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 EML6Q6ZMW3 1958 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 DNAH14Q0VDD8 3507 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 IGKV3-20P01619 116 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 Q6ZSR3 168 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 SYT8Q8NBV8 401 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 NPFFR1Q9GZQ6 430 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 ATP5G2Q06055 141 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 PGPEP1Q9NXJ5 209 aa11.5□□□□□ -0.57
LIMS1-215ENST00000544547 MUC22E2RYF6 1773 aaPredicted RBP11.5□□□□□ -0.57
LIMS1-215ENST00000544547 TRAV40A0A0B4J280 105 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 PSMB11A5LHX3 300 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 SRRM5B3KS81 715 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 SSBP2P81877 361 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-215ENST00000544547 KLF5Q13887 457 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-215ENST00000544547 Q8TAT8 98 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 VGLL1Q99990 258 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 KMT2EQ8IZD2 1858 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 C17orf100A8MU93 164 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 KLF17Q5JT82 389 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-215ENST00000544547 SPATA12Q7Z6I5 190 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 IGKV2-40A0A087WW87 121 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-215ENST00000544547 IGKV2D-40P01614 121 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-215ENST00000544547 Q6ZR03 302 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 C1orf122Q6ZSJ8 110 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 C8orf46Q8TAG6 207 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 FAM57AQ8TBR7 257 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 G3V4G9 280 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 ANXA2RQ3ZCQ2 193 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 IGFL4Q6B9Z1 124 aa11.49□□□□□ -0.57
LIMS1-215ENST00000544547 PTPN13Q12923 2485 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 PRSS47A8MTI9 375 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 WFDC2Q14508 124 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms