RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 TMEM147Q9BVK8 224 aa10.82□□□□□ -0.68
RTN3-211ENST00000542238 MCUBQ9NWR8 336 aa10.82□□□□□ -0.68
RTN3-211ENST00000542238 DUXBA0A1W2PPF3 345 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 FGL1Q08830 312 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 FCN2Q15485 313 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 BAP18Q8IXM2 172 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 TMEM256Q8N2U0 113 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 ZNF738Q8NE65 137 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 C17orf77Q96MU5 243 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 CIB3Q96Q77 187 aaPredicted RBP10.81□□□□□ -0.68
RTN3-211ENST00000542238 LINC01587Q99440 93 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 PPP1R14DQ9NXH3 145 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 LINC00588Q9Y4M8 146 aa10.81□□□□□ -0.68
RTN3-211ENST00000542238 PITX3O75364 302 aa10.8□□□□□ -0.68
RTN3-211ENST00000542238 AZU1P20160 251 aa10.8□□□□□ -0.68
RTN3-211ENST00000542238 BTCP35070 178 aa10.8□□□□□ -0.68
RTN3-211ENST00000542238 RHOBP62745 196 aa10.8□□□□□ -0.68
RTN3-211ENST00000542238 IGFL4Q6B9Z1 124 aa10.8□□□□□ -0.68
RTN3-211ENST00000542238 Q8N1X5 172 aa10.8□□□□□ -0.68
RTN3-211ENST00000542238 RNF182Q8N6D2 247 aa10.8□□□□□ -0.68
RTN3-211ENST00000542238 TRAV12-2A0A075B6T6 113 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 TRAV8-2A0A0B4J237 113 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 HTN1P15515 57 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 GATA2P23769 480 aaPredicted RBP10.79□□□□□ -0.68
RTN3-211ENST00000542238 UBE2MP61081 183 aaKnown RBP10.79□□□□□ -0.68
RTN3-211ENST00000542238 AKR1C1Q04828 323 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 SSX7Q7RTT5 188 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 SPATA12Q7Z6I5 190 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 C9orf62Q8N4C0 152 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 C16orf74Q96GX8 76 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 SLC25A39Q9BZJ4 359 aaPredicted RBP10.79□□□□□ -0.68
RTN3-211ENST00000542238 MED28Q9H204 178 aa10.79□□□□□ -0.68
RTN3-211ENST00000542238 TIMM8BQ9Y5J9 83 aaPredicted RBP10.79□□□□□ -0.68
RTN3-211ENST00000542238 PLAC8L1A1L4L8 177 aa10.78□□□□□ -0.68
RTN3-211ENST00000542238 NDUFB6O95139 128 aa10.78□□□□□ -0.68
RTN3-211ENST00000542238 SLC25A6P12236 298 aa10.78□□□□□ -0.68
RTN3-211ENST00000542238 TAS2R60P59551 318 aa10.78□□□□□ -0.68
RTN3-211ENST00000542238 HIST1H1AQ02539 215 aaPredicted RBP10.78□□□□□ -0.68
RTN3-211ENST00000542238 RNF141Q8WVD5 230 aa10.78□□□□□ -0.68
RTN3-211ENST00000542238 Q9H8V8 135 aa10.78□□□□□ -0.68
RTN3-211ENST00000542238 SCRT2Q9NQ03 307 aa10.78□□□□□ -0.68
RTN3-211ENST00000542238 HSPG2P98160 4391 aa10.78□□□□□ -0.68
RTN3-211ENST00000542238 WRBO00258 174 aa10.77□□□□□ -0.69
RTN3-211ENST00000542238 SYNGR2O43760 224 aa10.77□□□□□ -0.69
RTN3-211ENST00000542238 RPL7P18124 248 aaKnown RBP10.77□□□□□ -0.69
RTN3-211ENST00000542238 RAP2BP61225 183 aa10.77□□□□□ -0.69
RTN3-211ENST00000542238 TMEM128Q5BJH2 165 aa10.77□□□□□ -0.69
RTN3-211ENST00000542238 TTC32Q5I0X7 151 aa10.77□□□□□ -0.69
RTN3-211ENST00000542238 TMEM182Q6ZP80 229 aaPredicted RBP10.77□□□□□ -0.69
RTN3-211ENST00000542238 TMEM144Q7Z5S9 345 aa10.77□□□□□ -0.69
RTN3-211ENST00000542238 TMED4Q7Z7H5 227 aa10.77□□□□□ -0.69
RTN3-211ENST00000542238 LRRC20Q8TCA0 184 aa10.77□□□□□ -0.69
RTN3-211ENST00000542238 PRSS46E5RG02 174 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 H3BRN7 92 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 IL5P05113 134 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 VAMP1P23763 118 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 SPANXN5Q5MJ07 72 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 ZNF493Q6ZR52 646 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 S100A7AQ86SG5 101 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 LRTM2Q8N967 370 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 OR8A1Q8NGG7 326 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 OR10J6PQ8NGY7 276 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 SHANK2-AS3Q9BTD1 123 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 HIGD1AQ9Y241 93 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 HSPB11Q9Y547 144 aa10.76□□□□□ -0.69
RTN3-211ENST00000542238 HYPMO75409 117 aa10.75□□□□□ -0.69
RTN3-211ENST00000542238 ADAP1O75689 374 aa10.75□□□□□ -0.69
RTN3-211ENST00000542238 TCRBP04435 133 aa10.75□□□□□ -0.69
RTN3-211ENST00000542238 OR5I1Q13606 314 aa10.75□□□□□ -0.69
RTN3-211ENST00000542238 GNPNAT1Q96EK6 184 aaPredicted RBP10.75□□□□□ -0.69
RTN3-211ENST00000542238 NOP10Q9NPE3 64 aaKnown RBP10.75□□□□□ -0.69
RTN3-211ENST00000542238 STRAPQ9Y3F4 350 aaKnown RBP10.75□□□□□ -0.69
RTN3-211ENST00000542238 SMCO3A2RU48 225 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 LINC00862A6NCI5 91 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 PRAF2O60831 178 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 H2AFB2P0C5Z0 115 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 OR5G3P0C626 314 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 CXCL3P19876 107 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 CDKN1BP46527 198 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 PSG3Q16557 428 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 CYP2G1PQ6ZSU1 146 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 ACOT7LQ6ZUV0 252 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 ZNF431Q8TF32 576 aaPredicted RBP10.74□□□□□ -0.69
RTN3-211ENST00000542238 TMEM263Q8WUH6 116 aaKnown RBP10.74□□□□□ -0.69
RTN3-211ENST00000542238 NUDT15Q9NV35 164 aa10.74□□□□□ -0.69
RTN3-211ENST00000542238 TRAV26-1A0A087WT03 109 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 H3BP45 60 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 SMLR1H3BR10 107 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 H7BYZ3 331 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 M6PRP20645 277 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 SELENOTP62341 195 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 ZNF503Q96F45 646 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 Q9H3A6 140 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 RNF24Q9Y225 148 aa10.73□□□□□ -0.69
RTN3-211ENST00000542238 TRAV6A0A075B6T7 132 aa10.72□□□□□ -0.69
RTN3-211ENST00000542238 A0A087X0K7 114 aa10.72□□□□□ -0.69
RTN3-211ENST00000542238 A0A1W2PPQ1 181 aa10.72□□□□□ -0.69
RTN3-211ENST00000542238 LINC00869P0C866 280 aa10.72□□□□□ -0.69
RTN3-211ENST00000542238 CCDC28AQ8IWP9 274 aa10.72□□□□□ -0.69
RTN3-211ENST00000542238 RNASE8Q8TDE3 154 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 216 ms