RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 SIGLEC15Q6ZMC9 328 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 C8orf86Q6ZUL3 223 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 SVBPQ8N300 66 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 C11orf44Q8N8P7 122 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 RPUSD4Q96CM3 377 aaKnown RBP13.51□□□□□ -0.25
CLIP1-215ENST00000541108 RHPN1-AS1Q9BWJ2 59 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 Q9H3A6 140 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 OTORQ9NRC9 128 aa13.51□□□□□ -0.25
CLIP1-215ENST00000541108 IGHV3-49A0A0A0MS15 119 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 IGHV3-66A0A0C4DH42 116 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 TMEM213A2RRL7 107 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 HIST1H2BAQ96A08 127 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 C17orf77Q96MU5 243 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 PARLQ9H300 379 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 ZNF785A8K8V0 405 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 H3BTX0 84 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 CHEK1O14757 476 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 FHL3Q13643 280 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 C5orf17Q8NAS9 161 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 NIPSNAP3BQ9BS92 247 aa13.5□□□□□ -0.25
CLIP1-215ENST00000541108 SCO2A0A1W2PP80 73 aa13.49□□□□□ -0.25
CLIP1-215ENST00000541108 HELTA6NFD8 242 aa13.49□□□□□ -0.25
CLIP1-215ENST00000541108 ZNF727A8MUV8 499 aa13.49□□□□□ -0.25
CLIP1-215ENST00000541108 ARL6IP6Q8N6S5 226 aa13.49□□□□□ -0.25
CLIP1-215ENST00000541108 AAMDCQ9H7C9 122 aa13.49□□□□□ -0.25
CLIP1-215ENST00000541108 PEMTQ9UBM1 199 aa13.49□□□□□ -0.25
CLIP1-215ENST00000541108 EPDR1Q9UM22 224 aa13.49□□□□□ -0.25
CLIP1-215ENST00000541108 NIPBLQ6KC79 2804 aaeCLIP13.48□□□□□ -0.25
CLIP1-215ENST00000541108 SLURP1P55000 103 aa13.48□□□□□ -0.25
CLIP1-215ENST00000541108 RAX2Q96IS3 184 aa13.48□□□□□ -0.25
CLIP1-215ENST00000541108 SMIM7Q9BQ49 75 aa13.48□□□□□ -0.25
CLIP1-215ENST00000541108 SLC50A1Q9BRV3 221 aa13.48□□□□□ -0.25
CLIP1-215ENST00000541108 SETD2Q9BYW2 2564 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-215ENST00000541108 CCL24O00175 119 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 SLC17A3O00476 420 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 SNAPINO95295 136 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 SLC25A5P05141 298 aaKnown RBP13.47□□□□□ -0.25
CLIP1-215ENST00000541108 CBLN1P23435 193 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 GUCA2BQ16661 112 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.47□□□□□ -0.25
CLIP1-215ENST00000541108 C2CD4CQ8TF44 421 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 ZNF331Q9NQX6 463 aaPredicted RBP13.47□□□□□ -0.25
CLIP1-215ENST00000541108 PNRC1Q12796 327 aaPredicted RBP13.47□□□□□ -0.25
CLIP1-215ENST00000541108 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 NDUFA11Q86Y39 141 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 EXOC3-AS1Q8N2X6 119 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 OR9G4Q8NGQ1 327 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 CMTM2Q8TAZ6 248 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 CLEC5AQ9NY25 188 aa13.47□□□□□ -0.25
CLIP1-215ENST00000541108 A0A1W2PRX2 142 aa13.46□□□□□ -0.26
CLIP1-215ENST00000541108 C2orf70A6NJV1 201 aa13.46□□□□□ -0.26
CLIP1-215ENST00000541108 TMEM241Q24JQ0 296 aa13.46□□□□□ -0.26
CLIP1-215ENST00000541108 ZNF674Q2M3X9 581 aa13.46□□□□□ -0.26
CLIP1-215ENST00000541108 DLX4Q92988 240 aaPredicted RBP13.46□□□□□ -0.26
CLIP1-215ENST00000541108 TVP23CQ96ET8 276 aa13.46□□□□□ -0.26
CLIP1-215ENST00000541108 DUX3Q96PT4 197 aa13.46□□□□□ -0.26
CLIP1-215ENST00000541108 ATG101Q9BSB4 218 aa13.46□□□□□ -0.26
CLIP1-215ENST00000541108 NAT8Q9UHE5 227 aa13.46□□□□□ -0.26
CLIP1-215ENST00000541108 ADARB2-AS1A8MUL3 147 aa13.45□□□□□ -0.26
CLIP1-215ENST00000541108 M0QZ24 198 aa13.45□□□□□ -0.26
CLIP1-215ENST00000541108 PEX7O00628 323 aa13.45□□□□□ -0.26
CLIP1-215ENST00000541108 TCRAP04437 139 aa13.45□□□□□ -0.26
CLIP1-215ENST00000541108 DERL1Q9BUN8 251 aa13.45□□□□□ -0.26
CLIP1-215ENST00000541108 SDF2L1Q9HCN8 221 aa13.45□□□□□ -0.26
CLIP1-215ENST00000541108 C9JCJ5 164 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 S100A9P06702 114 aaKnown RBP13.44□□□□□ -0.26
CLIP1-215ENST00000541108 FOLR2P14207 255 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 RPL35P42766 123 aaKnown RBP13.44□□□□□ -0.26
CLIP1-215ENST00000541108 TAS2R60P59551 318 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 KRTAP10-3P60369 221 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 HIST2H2BDQ6DRA6 164 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 NRN1Q9NPD7 142 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 PRELID1Q9Y255 219 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 KLF12Q9Y4X4 402 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 AKR1C3P42330 323 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 CSN1S1P47710 185 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 CNN1P51911 297 aaKnown RBP13.44□□□□□ -0.26
CLIP1-215ENST00000541108 SAMD13Q5VXD3 122 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 CLRN3Q8NCR9 226 aa13.44□□□□□ -0.26
CLIP1-215ENST00000541108 SERTM2A0A1B0GWG4 89 aa13.43□□□□□ -0.26
CLIP1-215ENST00000541108 EDN2P20800 178 aa13.43□□□□□ -0.26
CLIP1-215ENST00000541108 RPL11P62913 178 aaKnown RBP13.43□□□□□ -0.26
CLIP1-215ENST00000541108 TCF24Q7RTU0 167 aa13.43□□□□□ -0.26
CLIP1-215ENST00000541108 LY96Q9Y6Y9 160 aa13.43□□□□□ -0.26
CLIP1-215ENST00000541108 JMJD1CQ15652 2540 aa13.43□□□□□ -0.26
CLIP1-215ENST00000541108 MAST4O15021 2626 aa13.42□□□□□ -0.26
CLIP1-215ENST00000541108 K7EQM0 130 aa13.42□□□□□ -0.26
CLIP1-215ENST00000541108 GNG5P63218 68 aa13.42□□□□□ -0.26
CLIP1-215ENST00000541108 TMEM183BQ1AE95 376 aa13.42□□□□□ -0.26
CLIP1-215ENST00000541108 MLXQ9UH92 298 aa13.42□□□□□ -0.26
CLIP1-215ENST00000541108 TRBV20OR9-2A0A075B6H5 130 aa13.41□□□□□ -0.26
CLIP1-215ENST00000541108 B4DEV8 164 aa13.41□□□□□ -0.26
CLIP1-215ENST00000541108 DIRC3C9JPN6 131 aa13.41□□□□□ -0.26
CLIP1-215ENST00000541108 AWAT1Q58HT5 328 aa13.41□□□□□ -0.26
CLIP1-215ENST00000541108 MRPL53Q96EL3 112 aaKnown RBP13.41□□□□□ -0.26
CLIP1-215ENST00000541108 M0R036 132 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 M0R3E3 92 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 SOCS3O14543 225 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 UBE2G1P62253 170 aa13.4□□□□□ -0.26
CLIP1-215ENST00000541108 NSUN5P1Q3KNT7 163 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms