RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 C9orf62Q8N4C0 152 aa13.05□□□□□ -0.32
CLSTN3-210ENST00000540931 PHYHIPLQ96FC7 376 aa13.05□□□□□ -0.32
CLSTN3-210ENST00000540931 SLC25A2Q9BXI2 301 aa13.05□□□□□ -0.32
CLSTN3-210ENST00000540931 SH3BGRL3Q9H299 93 aa13.05□□□□□ -0.32
CLSTN3-210ENST00000540931 AAMDCQ9H7C9 122 aa13.05□□□□□ -0.32
CLSTN3-210ENST00000540931 CTXND1A0A1B0GTU2 59 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 TEX46H3BTG2 121 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 SOCS3O14543 225 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 CXorf1O96002 111 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 NBEAP1P0C6P0 100 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 IGHV4-30-4P0DP06 118 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 DEFB131AP59861 70 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 RAB2AP61019 212 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 FAM74A1Q5RGS3 127 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 FAM122CQ6P4D5 195 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 RPP25LQ8N5L8 163 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 RNF141Q8WVD5 230 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 FAM167A-AS1Q96KT0 104 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 TMEM167BQ9NRX6 74 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 C19orf73Q9NVV2 129 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 SELENOKQ9Y6D0 94 aa13.04□□□□□ -0.32
CLSTN3-210ENST00000540931 TRBV19A0A075B6N1 114 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 TRAV5A0A0B4J249 113 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 ZNF688P0C7X2 276 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 STAG3L2P0CL84 134 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 STAG3L3P0CL85 134 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 APOC4P55056 127 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 NUTF2P61970 127 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 PSMG4Q5JS54 123 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 EBLN2Q6P2I7 272 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 FOXI2Q6ZQN5 318 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 STHQ8IWL8 128 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 RAB24Q969Q5 203 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 MRPL53Q96EL3 112 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 SRD5A3Q9H8P0 318 aa13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 ZNF331Q9NQX6 463 aaPredicted RBP13.03□□□□□ -0.32
CLSTN3-210ENST00000540931 LOC102724200A0A096LPH7 203 aaPredicted RBP13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 KIR2DL5BA0A0G2JN68 375 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 KIR2DL5BA0A0G2JPC4 375 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 UBE2CO00762 179 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 UBE2L3P68036 154 aaKnown RBP13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 MORN5Q5VZ52 161 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 KIR2DL5AQ8N109 375 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 ARL6IP6Q8N6S5 226 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 KIR2DL5BQ8NHK3 375 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 LINC00052Q96N35 136 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 CLUHP3Q96NS8 147 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 UBQLN2Q9UHD9 624 aa13.02□□□□□ -0.33
CLSTN3-210ENST00000540931 DUSP14O95147 198 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-210ENST00000540931 CD300CQ08708 224 aa13.01□□□□□ -0.33
CLSTN3-210ENST00000540931 PSG3Q16557 428 aa13.01□□□□□ -0.33
CLSTN3-210ENST00000540931 MORN3Q6PF18 240 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-210ENST00000540931 DEFB125Q8N687 156 aa13.01□□□□□ -0.33
CLSTN3-210ENST00000540931 SAT2Q96F10 170 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-210ENST00000540931 NKX6-2Q9C056 277 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-210ENST00000540931 PRB2P02812 416 aaPredicted RBP13□□□□□ -0.33
CLSTN3-210ENST00000540931 NHLRC4P0CG21 123 aaPredicted RBP13□□□□□ -0.33
CLSTN3-210ENST00000540931 PPT1P50897 306 aa13□□□□□ -0.33
CLSTN3-210ENST00000540931 RXFP4Q8TDU9 374 aa13□□□□□ -0.33
CLSTN3-210ENST00000540931 B9D2Q9BPU9 175 aa13□□□□□ -0.33
CLSTN3-210ENST00000540931 ZNF586Q9NXT0 402 aa13□□□□□ -0.33
CLSTN3-210ENST00000540931 KMT2CQ8NEZ4 4911 aaKnown RBP13□□□□□ -0.33
CLSTN3-210ENST00000540931 H3BQ15 152 aa12.99□□□□□ -0.33
CLSTN3-210ENST00000540931 CSN1S1P47710 185 aa12.99□□□□□ -0.33
CLSTN3-210ENST00000540931 ZNF738Q8NE65 137 aa12.99□□□□□ -0.33
CLSTN3-210ENST00000540931 TMED6Q8WW62 240 aa12.99□□□□□ -0.33
CLSTN3-210ENST00000540931 FXYD5Q96DB9 178 aa12.99□□□□□ -0.33
CLSTN3-210ENST00000540931 C1QTNF4Q9BXJ3 329 aa12.99□□□□□ -0.33
CLSTN3-210ENST00000540931 SAV1Q9H4B6 383 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-210ENST00000540931 FRMD6-AS1P0C7T7 363 aa12.98□□□□□ -0.33
CLSTN3-210ENST00000540931 PYYP10082 97 aa12.98□□□□□ -0.33
CLSTN3-210ENST00000540931 HLA-DRB4P13762 266 aa12.98□□□□□ -0.33
CLSTN3-210ENST00000540931 APRG1Q8IVJ8 170 aa12.98□□□□□ -0.33
CLSTN3-210ENST00000540931 BLNKQ8WV28 456 aa12.98□□□□□ -0.33
CLSTN3-210ENST00000540931 RFNGQ9Y644 331 aa12.98□□□□□ -0.33
CLSTN3-210ENST00000540931 HLA-DRB4X5D2U9 266 aa12.98□□□□□ -0.33
CLSTN3-210ENST00000540931 HBE1P02100 147 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 OR10J4P0C629 311 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 ARL14EPLP0DKL9 152 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 SULT1A2P50226 295 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 LINC00322Q6ZN03 302 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 FAM24BQ8N5W8 94 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 OR10J6PQ8NGY7 276 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 SUN5Q8TC36 379 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 MBD3L1Q8WWY6 194 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 C17orf77Q96MU5 243 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 ARL2-SNX15V9GYD0 113 aa12.97□□□□□ -0.33
CLSTN3-210ENST00000540931 TRAV8-2A0A0B4J237 113 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 MAP1LC3B2A6NCE7 125 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 AMBPP02760 352 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 H2AFB1P0C5Y9 115 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 GCHFRP30047 84 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 ACTL10Q5JWF8 245 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 CMTM2Q8TAZ6 248 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 RPUSD4Q96CM3 377 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 MAP1LC3BQ9GZQ8 125 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 CSTL1Q9H114 145 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 OTORQ9NRC9 128 aa12.96□□□□□ -0.33
CLSTN3-210ENST00000540931 A0A0J9YX75 114 aa12.95□□□□□ -0.34
CLSTN3-210ENST00000540931 SERTM2A0A1B0GWG4 89 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms